Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 36 Aligned Residues 287 % Identity 13% Template c2yxxA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure analysis of diaminopimelate decarboxylate (lysa) Resolution 1.70 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.
Predicted Secondary structure																									.	.																									.	.																								.
Query SS confidence																									.	.																									.	.																								.
Query Sequence		P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	.	.	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	.	G	P	I	L	M
Query Conservation																									.	.																									.	.																								.
Alig confidence						.																			.	.													.	.	.	.									.	.				.																				.
Template Conservation						.																																	.	.	.	.														.
Template Sequence		P	T	Y	V	.	Y	F	E	E	T	L	R	K	R	S	R	L	V	K	E	V	F	E	G	V	N	L	L	P	T	F	A	V	K	A	N	N	.	.	.	.	N	P	V	L	L	K	I	L	R	E	E	G	F	.	G	X	D	V	V	T	K	G	E	L	L	A	A	K	L	A	G	V	P	S	H	T	V	V	W
Template Known Secondary structure		S				.																	T	T	T	S								G	G	G			.	.	.	.											T	T		.						S										T	T			G	G	G
Template Predicted Secondary structure						.																																	.	.	.	.														.
Template SS confidence
		14	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.					50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.															130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																				.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	.	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	G	F	Q	P	D	R	V	L	T	V	W	Q
Query Conservation																				.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.																				.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.
Template Sequence		N	G	N	G	K	S	R	D	Q	X	E	H	F	L	R	E	D	V	R	I	V	N	V	D	S	F	E	E	X	E	I	W	R	E	L	N	P	E	.	G	V	E	Y	F	I	R	V	N	P	E	V	D	A	K	T	H	P	H	I	S	T	G	L	K	K	H	K	F	G	I	P	L	E	D	L	D	S	F	X	E
Template Known Secondary structure				S													T	T																					T	.	T													T	T	T	S										S	S	S	S			G	G	G
Template Predicted Secondary structure																																								.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.											.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																						.																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.																									.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	R	A	M	A	N	V	G	E	M	T	L	M	S	H	F	A	E	A	.	E	H	P	D	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	E	C	R	R	.	.	.	.	.	.	.	.	.	.	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L
Query Conservation																						.																									.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.																.																									.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.
Template Sequence		R	F	.	.	.	R	S	X	N	I	R	G	L	H	V	H	I	G	S	Q	I	T	R	V	E	P	F	V	E	A	F	S	K	V	V	R	A	S	E	R	Y	G	F	E	E	I	N	I	G	G	G	W	G	I	N	Y	S	G	E	E	L	D	L	S	S	Y	R	E	K	V	V	P	D	L	K	R	F	K	R	V
Template Known Secondary structure				.	.	.	T	T	S											S	S	B			S																		T		S								B				S	S	S												T	G	G	G	G	T	T		S
Template Predicted Secondary structure				.	.	.
Template SS confidence
		167	.				.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		Y	G	A	S	P	S	G	Q	W	R	D	I	A	N	T	G	L	R	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	.	T	P	V	L	V	D	G	V
Query Conservation																																																																									.
Alig confidence				.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation				.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	.	.	.	.	.	.	.	.	E	I	G	R	Y	I	V	A	P	S	G	Y	L	L	L	R	V	V	L	V	K	R	R	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	K	A	F	V	V	V	D	G	G	X	N	V	L	I	R	P	A	L	Y	S	A	Y	H	R	I	F	V	L	G	K
Template Known Secondary structure				.	.	.	.	.	.	.	.								G	G	G														T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							S			T	T	T							T									T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		244	.									.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.																270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
							292	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure		.	.	.	.	.											.	.
Query SS confidence		.	.	.	.	.											.	.
Query Sequence		.	.	.	.	.	R	T	M	T	V	G	T	V	S	M	.	.	D	M	L	A	V	D	L	T	P	C	P	Q	A	G	I	G	T	P	V	E	L	W	G
Query Conservation		.	.	.	.	.											.	.
Alig confidence		.	.	.	.	.											.	.								.
Template Conservation																										.
Template Sequence		Q	G	K	E	X	R	A	D	V	V	G	P	L	C	E	S	G	D	V	I	A	Y	D	R	.	E	L	P	E	V	E	P	G	D	I	I	A	V	E	N
Template Known Secondary structure					S								S	S	S	S	T	T								.			S				T	T						S	S
Template Predicted Secondary structure																										.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions