Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 10 Aligned Residues 342 % Identity 30% Template c2vd9A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: the crystal structure of alanine racemase from bacillus2 anthracis (ba0252) with bound l-ala-p Resolution 2.1 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		M	T	R	P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I	L	M	L
Query Conservation																																																				.
Alig confidence																																																				.
Template Conservation
Template Sequence		F	Y	R	D	T	W	V	E	V	D	L	D	A	I	Y	N	N	V	T	H	I	E	F	I	P	S	D	V	E	I	F	A	V	V	K	G	N	A	Y	G	H	D	Y	V	P	V	A	I	A	L	E	A	G	A	T	R	L	A	V	A	F	L	D	E	A	L	V	L	R	R	A	G	I	T	A	P	I	L	V	L
Template Known Secondary structure				S	S																				S		T	T														T								T	T	T	T	T							S	S										T	T			S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	R	L	G	F	Q	P	D	R	V	L	T	V	W	Q	Q	L	R	A	M	A	N	V	G	E	M	T	L	M	S	H
Query Conservation
Alig confidence									.																							.	.																															.	.
Template Conservation									.																							.	.																															.	.
Template Sequence		G	P	S	P	P	R	D	.	I	N	V	A	A	E	N	D	V	A	L	T	V	F	Q	E	W	V	D	E	A	I	.	.	L	W	D	G	S	S	T	M	Y	H	I	N	F	D	S	G	M	G	R	I	G	I	R	E	R	E	L	G	F	L	.	.	S	L	E	G	A	P	F	L	E	L	E	G	V	Y	T	H
Template Known Secondary structure		S				G	G	G	.							T	T				B											.	.				S	S								B		S	S			S	S	S	B									.	.		G	G	G		T	T
Template Predicted Secondary structure									.																							.	.																															.	.
Template SS confidence
		88	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.					.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure									.																		.	.	.	.
Query SS confidence									.																		.	.	.	.
Query Sequence		F	A	E	A	E	H	P	.	D	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	.	.	.	.	E	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	Q	W	R	D	I	A	N	T	G	L	R	P	V	M	T
Query Conservation									.																		.	.	.	.
Alig confidence									.																		.	.	.	.																																												.
Template Conservation																																																																										.
Template Sequence		F	A	T	A	D	E	V	E	T	S	Y	F	D	Q	Y	N	T	F	L	E	Q	L	S	W	L	E	F	G	V	D	P	F	V	H	T	A	N	S	A	A	T	L	R	F	Q	G	I	T	F	N	A	V	R	I	G	I	A	M	Y	G	L	S	P	S	V	E	I	R	P	F	L	P	.	F	L	E	P	A	L	S
Template Known Secondary structure			S	S	T	T	S	S	S		T	T	T																S																	S	S			T	T					S	T	T	T	T	T			S		T	T	T	G	G	G			.
Template Predicted Secondary structure																																																																										.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D	G	V	R	T	M	T	V	G	T	V	S	M	D	M	L	A	V	D	L	T	P	C	P	Q	A
Query Conservation
Alig confidence					.								.																	.																				.								.																			.	.	.
Template Conservation					.								.																	.																				.								.																			.	.	.
Template Sequence		L	H	T	.	V	A	H	I	K	Q	V	.	I	G	D	G	I	S	Y	N	V	T	Y	R	T	T	E	E	.	W	I	A	T	V	A	I	G	Y	A	D	G	W	L	R	R	L	Q	G	.	F	E	V	L	V	N	G	.	R	V	P	I	V	G	R	V	T	M	D	Q	F	M	I	H	L	P	.	.	.	C	E
Template Known Secondary structure					.								.						S	G	G	G								.						S			G	G	G	T			G	G	G	T	T	.				B	S			.						S				S	S							S	.	.	.	S
Template Predicted Secondary structure					.								.																	.																				.								.																			.	.	.
Template SS confidence
		252	.	.		.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.				.	.
		315	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		G	I	G	T	P	V	E	L	W	G	K	E	.	.	.	.	I	K	I	D	D	V	A	A	A	A	G	T	V	G	Y	E	L	M	C	A	L	A	L	R	V	P	V	V	T	V
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.
Template Conservation
Template Sequence		V	P	L	G	T	V	T	L	I	G	R	Q	G	D	E	Y	I	S	A	T	E	V	A	E	Y	S	G	T	I	N	Y	E	I	I	T	T	I	S	F	R	V	P	R	I	F	I
Template Known Secondary structure				T	T									T	T													T	S								T	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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