Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 25 Aligned Residues 297 % Identity 19% Template c2qghA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from helicobacter2 pylori complexed with l-lysine Resolution 2.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																									.	.
Query SS confidence																									.	.																									.	.
Query Sequence		P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	.	.	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I	L	M	L
Query Conservation																									.	.																									.	.
Alig confidence						.																			.	.													.	.	.	.									.	.				.
Template Conservation						.																																	.	.	.	.														.
Template Sequence		P	F	Y	L	.	Y	D	F	D	K	I	K	Q	A	F	L	N	Y	K	E	A	F	K	G	R	K	S	L	I	C	Y	A	L	K	A	N	S	.	.	.	.	N	L	S	I	L	S	L	L	A	H	L	E	S	.	G	A	D	C	V	S	I	G	E	I	Q	R	A	L	K	A	G	I	K	P	Y	R	I	V	F
Template Known Secondary structure		S				.																T	T		S	S								G	G	G			.	.	.	.											T	T		.					S	S										T	T			G	G	G
Template Predicted Secondary structure						.																																	.	.	.	.														.
Template SS confidence
		14	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.					50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.															.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure					.															.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.															.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	G	F	.	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	.	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	.	.	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	L	G	F	Q	P	D	R	V	L	T	V
Query Conservation					.															.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.															.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	V	G	K	S	A	F	E	I	E	Q	A	L	K	L	N	I	L	F	L	N	V	E	S	F	M	E	L	K	T	I	E	T	I	A	Q	S	L	G	I	K	A	R	I	S	I	R	I	N	P	N	I	D	A	K	T	H	P	Y	I	S	T	G	L	K	E	N	K	F	G	V	G	E	K	E	A	L	E	M
Template Known Secondary structure				T	T												T	T		S						S															T									B								S		G	G	G	B			S	T	T	S	S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.							.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																									.																				.	.	.	.	.	.
Query SS confidence																									.																				.	.	.	.	.	.
Query Sequence		W	Q	Q	L	R	A	M	A	N	V	G	E	M	T	L	M	S	H	F	A	E	A	E	.	H	P	D	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	.	.	.	.	.	.	E	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G
Query Conservation																									.																				.	.	.	.	.	.
Alig confidence																									.																				.	.	.	.	.	.
Template Conservation
Template Sequence		F	L	W	A	K	K	S	A	F	L	E	P	V	S	V	H	F	H	I	G	S	Q	L	L	D	L	E	P	I	I	E	A	S	Q	K	V	A	K	I	A	K	S	L	I	A	L	G	I	D	L	R	F	F	D	V	G	G	G	I	G	V	S	Y	E	N	E	E	T	I	K	L	Y	D	Y	A	Q	G	I	L	N
Template Known Secondary structure									S	S											B	S	S	B																							T	T												B				T	T	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.																																																													.	.	.
Query SS confidence																.	.	.																																																													.	.	.
Query Sequence		A	S	P	S	G	Q	W	R	D	I	A	N	T	G	.	.	.	L	R	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	.	.	.
Query Conservation																.	.	.																																																													.	.	.
Alig confidence																.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	Q	G	L	D	L	T	I	I	C	E	P	G	R	S	I	V	A	E	S	G	E	L	I	T	Q	V	L	Y	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	K	R	F	V	I	V	D	A	G	M	N	D	F	L	R	P	S	L	Y	H	A	K	H	A	I	R	V	I	T
Template Known Secondary structure			T	T	T															T	T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S			T	T	T																	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.																		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
				289	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure		.	.													.	.
Query SS confidence		.	.													.	.
Query Sequence		.	.	D	G	V	R	T	M	T	V	G	T	V	S	.	.	M	D	M	L	A	V	D	L	T	P	C	P	Q	A	G	I	G	T	P	V	E	L	W	G
Query Conservation		.	.													.	.
Alig confidence		.	.													.	.										.
Template Conservation																											.
Template Sequence		P	S	E	I	S	P	C	D	V	V	G	P	V	C	E	S	S	D	T	F	L	K	D	A	H	.	L	P	E	L	E	P	G	D	K	I	A	I	E	K
Template Known Secondary structure													S	S	S	S	T	T									.						T	T							S
Template Predicted Secondary structure																											.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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