Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 34 Aligned Residues 294 % Identity 15% Template c2pljA_ PDB info PDB header:lyase Chain: A: PDB Molecule:lysine/ornithine decarboxylase; PDBTitle: crystal structure of lysine/ornithine decarboxylase complexed with2 putrescine from vibrio vulnificus Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I	L	M	L	E	G
Query Conservation																																																	.	.
Alig confidence						.																															.	.	.	.									.	.				.
Template Conservation						.																															.	.	.	.														.
Template Sequence		P	L	L	L	.	L	D	C	D	V	I	R	Q	Q	Y	R	A	L	K	N	A	L	P	N	V	T	L	H	Y	A	L	K	P	L	P	.	.	.	.	H	P	V	V	V	R	T	L	L	A	E	G	A	.	S	F	D	L	A	T	T	G	E	V	E	L	V	A	S	E	G	V	P	A	D	L	T	I	H	T	H
Template Known Secondary structure		S				.																	S	T	T							S	T	T			.	.	.	.												T		.						S										T	T			G	G	G
Template Predicted Secondary structure						.																															.	.	.	.														.
Template SS confidence
		36	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		82		.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.															.
Query SS confidence			.															.
Query Sequence		F	.	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	.	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	R	L	G	F	Q	P	D	R	V	L	T	V	W	Q	Q	L	R	A	M	A	N	V	G	E	M	T	L	M	S	H
Query Conservation			.															.
Alig confidence			.															.																					.	.									.																					.
Template Conservation																																							.	.									.																					.
Template Sequence		P	I	K	R	D	A	D	I	R	D	A	L	A	Y	G	C	N	V	F	V	V	D	N	L	N	E	L	E	K	F	K	A	Y	R	D	D	V	.	.	E	L	L	V	R	L	S	F	.	S	K	K	F	G	C	S	P	E	Q	A	L	V	I	I	E	T	A	K	E	.	W	N	I	R	I	K	G	L	S	F	H
Template Known Secondary structure		S	S													T								S						T	T	G	G	G	T	T	T		.	.						B			.				S		B															.	T	T
Template Predicted Secondary structure																																							.	.									.																					.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.
		160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.									.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure							.												.	.	.	.																															.	.	.	.	.	.	.	.
Query SS confidence							.												.	.	.	.																															.	.	.	.	.	.	.	.
Query Sequence		F	A	E	A	E	.	H	P	D	G	I	S	G	A	M	A	R	.	.	.	.	I	E	Q	A	A	E	G	L	E	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	.	.	.	.	.	.	.	.	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	Q	W	R	D	I	A	N
Query Conservation							.												.	.	.	.																															.	.	.	.	.	.	.	.
Alig confidence							.												.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	S	Q	T	T	N	P	N	K	Y	V	E	A	I	H	T	C	R	H	V	M	E	Q	V	V	E	R	G	L	P	A	L	S	T	L	D	I	G	G	G	F	P	V	N	Y	T	Q	Q	V	M	P	I	D	Q	F	C	A	P	I	N	E	A	L	S	L	L	P	E	T	V	H	V	L	A	E	P	G	R	F
Template Known Secondary structure				T	T				T																				T	T																	S	S	S																	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290								.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.
Query Sequence		T	G	L	R	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D	G	.	.	.	.	.	.	.	V	R	T	M	T	V	G	T	V
Query Conservation																																																																		.	.	.	.	.	.	.
Alig confidence			.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template Conservation			.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	.	C	A	P	A	V	T	S	V	A	S	V	M	G	Q	A	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	Q	I	W	Y	Y	L	D	D	G	I	Y	G	S	F	S	G	L	M	F	D	D	A	R	Y	P	L	T	T	I	K	Q	G	G	E	L	I	P	S	V	L	S	G	P	T
Template Known Secondary structure			.		G	G	G														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							S			T	T	T	G	G	G					S									S			S	S										S	S
Template Predicted Secondary structure			.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		275		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.																.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		S	M	.	.	D	M	L	A	V	D	L	T	P	C	P	Q	A	G	I	G	T	P	V	E	L	W	G
Query Conservation				.	.
Alig confidence				.	.									.
Template Conservation														.
Template Sequence		C	D	S	V	D	V	I	A	E	N	I	L	.	L	P	K	L	N	N	G	D	L	V	I	G	R	T
Template Known Secondary structure		S		T	T									.						T	T						S	S
Template Predicted Secondary structure														.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions