Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 23 Aligned Residues 297 % Identity 17% Template c2p3eA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of aq1208 from aquifex aeolicus Resolution 1.99 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I	L	M	L	E	G
Query Conservation																																																	.	.
Alig confidence						.																															.	.	.	.									.	.				.
Template Conservation						.																															.	.	.	.														.
Template Sequence		P	L	Y	V	.	Y	S	S	N	F	I	K	E	R	F	E	A	Y	R	K	A	F	P	D	A	L	I	C	Y	A	V	K	A	N	F	.	.	.	.	N	P	H	L	V	K	L	L	G	E	L	G	A	.	G	A	D	I	V	S	G	G	E	L	Y	L	A	K	K	A	G	I	P	P	E	R	I	V	Y	A	G
Template Known Secondary structure		S				.																	S	T	T	S						G	G	G			.	.	.	.											T	T		.					S	S										T	T			G	G	G					S
Template Predicted Secondary structure						.																															.	.	.	.														.
Template SS confidence
		35	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
			82	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.																.																			.	.
Query SS confidence		.																.																			.	.
Query Sequence		.	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	.	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	.	.	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	R	L	G	F	Q	P	D	R	V	L	T	V	W	Q	Q	L	R	A	M	A	N	V	G	E	M	T	L	M
Query Conservation		.																.																			.	.
Alig confidence		.																.																			.	.													.	.
Template Conservation																																																			.	.
Template Sequence		V	G	K	T	E	K	E	L	T	D	A	V	D	S	E	I	L	M	F	N	V	E	S	R	Q	E	L	D	V	L	N	E	I	A	G	K	L	G	K	K	A	R	I	A	I	R	V	N	P	.	.	S	K	F	G	V	D	I	R	E	A	Q	K	E	Y	E	Y	A	S	K	L	E	N	L	E	I	V	G	I	H
Template Known Secondary structure		S													T	T		S																					T												.	.			S				G	G	G										T		T	T
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		158	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.																					.	.	.																																														.	.	.	.
Query SS confidence									.																					.	.	.																																														.	.	.	.
Query Sequence		S	H	F	A	E	A	E	.	H	P	D	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	E	.	.	.	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	Q	W	R	D	I	A	N	T	G	L	.	.	.	.
Query Conservation									.																					.	.	.																																														.	.	.	.
Alig confidence									.																					.	.	.																																														.	.	.	.
Template Conservation
Template Sequence		C	H	I	G	S	Q	I	L	D	I	S	P	Y	R	E	A	V	E	K	V	V	S	L	Y	E	S	L	T	Q	K	G	F	D	I	K	Y	L	D	I	G	G	G	L	G	I	K	Y	K	P	E	D	K	E	P	A	P	Q	D	L	A	D	L	L	K	D	L	L	V	K	A	K	I	I	L	E	P	G	R	S	I
Template Known Secondary structure						S	S	B	S	S		T																			T	T												B					S	T	T														T	T	T				S							S
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.					.	290	.	.	.	.	.	.	.	.	.	300	.			.
Predicted Secondary structure		.																																																												.	.	.	.														.	.
Query SS confidence		.																																																												.	.	.	.														.	.
Query Sequence		.	R	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	.	.	.	.	D	G	V	R	T	M	T	V	G	T	V	S	M	.	.	D
Query Conservation		.																																																												.	.	.	.														.	.
Alig confidence		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.														.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	G	N	A	G	I	L	I	T	Q	V	Q	F	L	K	D	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	H	F	I	I	V	D	A	G	M	N	D	L	I	R	P	S	I	Y	N	A	Y	H	H	I	I	P	V	E	T	K	E	V	V	A	D	I	V	G	P	I	C	E	T	G	D
Template Known Secondary structure			G	G	G														T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							S			T	T	T																S	B											S	S	S	S	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.																.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	A	V	D	L	T	P	C	P	Q	A	G	I	G	T	P	V	E	L	W	G
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		F	L	A	L	D	R	E	.	I	E	E	V	Q	R	G	E	Y	L	A	V	L	S
Template Known Secondary structure									.						T	T							S
Template Predicted Secondary structure									.
Template SS confidence
		353	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions