Job Description P29012 Confidence 99.96% Date Thu Jan 5 11:45:32 GMT 2012 Rank 39 Aligned Residues 296 % Identity 13% Template c2on3A_ PDB info PDB header:lyase Chain: A: PDB Molecule:ornithine decarboxylase; PDBTitle: a structural insight into the inhibition of human and2 leishmania donovani ornithine decarboxylases by 3-aminooxy-3 1-aminopropane Resolution 3.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.
Predicted Secondary structure																																																		.	.																								.
Query SS confidence																																																		.	.																								.
Query Sequence		R	P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	.	G	P	I	L	M	L
Query Conservation																																																		.	.																								.
Alig confidence							.																															.	.	.	.									.	.				.																				.
Template Conservation							.																															.	.	.	.														.
Template Sequence		D	A	F	Y	V	.	A	D	L	G	D	I	L	K	K	H	L	R	W	L	K	A	L	P	R	V	T	P	F	Y	A	V	K	C	N	D	.	.	.	.	S	K	A	I	V	K	T	L	A	A	T	G	T	.	G	F	D	C	A	S	K	T	E	I	Q	L	V	Q	S	L	G	V	P	P	E	R	I	I	Y	A
Template Known Secondary structure							.																		T	T							G	G	G			.	.	.	.												T		.						S									T	T	T			G	G	G
Template Predicted Secondary structure							.																															.	.	.	.														.
Template SS confidence
		38	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		E	G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	.	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	R	L	G	F	Q	P	D	R	V	L	T	V	W	Q	Q	L	R	A	M	A	N	V	G	E	M	T	L	M	S
Query Conservation																			.
Alig confidence																			.																				.	.										.	.																					.
Template Conservation																																							.	.										.	.																					.
Template Sequence		N	P	C	K	Q	V	S	Q	I	K	Y	A	A	N	N	G	V	Q	M	M	T	F	D	S	E	V	E	L	M	K	V	A	R	A	H	P	K	.	.	A	K	L	V	L	R	I	A	T	.	.	V	K	F	G	A	T	L	R	T	S	R	L	L	L	E	R	A	K	E	L	.	N	I	D	V	V	G	V	S	F
Template Known Secondary structure			S	S											T	T	T								S												T	T	.	.										.	.			S		B															T	.	T
Template Predicted Secondary structure																																							.	.										.	.																					.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.
		159	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.									.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure							.																						.	.	.	.																														.	.	.	.	.	.	.	.
Query SS confidence							.																						.	.	.	.																														.	.	.	.	.	.	.	.
Query Sequence		H	F	A	E	A	.	E	H	P	D	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	E	.	.	.	.	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	.	.	.	.	.	.	.	.	G	A	S	P	S	G	Q	W	R	D	I	A
Query Conservation							.																						.	.	.	.																														.	.	.	.	.	.	.	.
Alig confidence							.																						.	.	.	.																														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	V	G	S	G	C	T	D	P	E	T	F	V	Q	A	I	S	D	A	R	C	V	F	D	M	G	A	E	V	G	F	S	M	Y	L	L	D	I	G	G	G	F	P	G	S	E	D	V	K	L	K	F	E	E	I	T	G	V	I	N	P	A	L	D	K	Y	F	P	S	D	S	G	V	R	I	I	A	E	P	G
Template Known Secondary structure					T	T				S																				T	T															S	S	S	S	S	S																	S		G	G	G									S
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.											.	290	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	T	G	L	R	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	.	.	.	.	.	.	.	.	.	.	D	G	V	R	T	M	T
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	Y	Y	V	A	S	A	F	T	L	A	V	N	I	I	A	K	K	I	V	L	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	F	M	Y	Y	V	N	D	G	V	Y	G	S	F	N	C	I	L	Y	D	H	A	H	V	K	P	L	L	Q	K	R	P	K	P	D	E	K	Y	Y	S	S	S	I
Template Known Secondary structure						T	T	T																	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S			T	T	T	G	G	G					T									S	S				S	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.															300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		296	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		V	G	T	V	S	M	.	.	D	M	L	A	V	D	L	T	P	C	P	Q	A	G	I	G	T	P	V	E	L	W	G
Query Conservation								.	.
Alig confidence								.	.									.
Template Conservation																		.
Template Sequence		W	G	P	T	C	D	G	L	D	R	I	V	E	R	C	D	.	L	P	E	M	H	V	G	D	W	M	L	F	E	N
Template Known Secondary structure				S	S	S		T	T									.						T	T							S
Template Predicted Secondary structure																		.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions