Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 3 Aligned Residues 349 % Identity 48% Template c2odoC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of pseudomonas fluorescens alanine racemase Resolution 2.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		R	P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I	L	M	L	E	G
Query Conservation																																																		.
Alig confidence																												.	.																					.
Template Conservation																												.	.
Template Sequence		R	P	A	R	A	L	I	D	L	Q	A	L	R	H	N	Y	Q	L	A	R	E	V	T	G	A	K	.	.	A	L	A	V	I	A	D	A	Y	G	H	G	A	V	R	C	A	Q	A	L	E	A	E	A	D	G	F	A	V	A	C	I	E	E	A	L	E	L	R	A	A	G	I	R	A	P	I	L	L	L	E	G
Template Known Secondary structure																										S		.	.											T										G	G	G		S					S	S										T	T			S					T	T
Template Predicted Secondary structure																												.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	R	L	G	F	Q	P	D	R	V	L	T	V	W	Q	Q	L	R	A	M	A	N	V	G	E	M	T	L	M	S	H	F	A
Query Conservation
Alig confidence																																							.
Template Conservation																																							.
Template Sequence		F	F	E	A	D	E	L	P	L	I	V	E	H	D	F	W	C	V	V	H	S	L	W	Q	L	D	A	I	E	Q	A	R	L	A	K	P	I	.	H	V	W	L	L	D	S	G	M	H	R	V	G	L	H	P	N	D	Y	K	A	A	Y	Q	R	L	Q	A	S	A	N	V	A	K	I	V	L	M	S	H	F	A
Template Known Secondary structure			S	S	G	G	G							T	T							S										S			S	S			.							S	S	S		S	S																T	S	S	S											S
Template Predicted Secondary structure																																							.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		E	A	E	H	P	D	.	.	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	E	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	Q	W	R	D	I	A	N	T	G	L	R	P	V	M	T	L	S	S	E	I
Query Conservation								.	.
Alig confidence								.	.																																																						.
Template Conservation																																																															.
Template Sequence		R	A	D	E	L	D	C	T	R	S	V	E	Q	V	A	V	F	L	G	A	R	A	D	L	T	A	E	I	S	L	R	N	S	P	A	V	L	G	W	P	R	V	P	S	D	W	V	R	P	G	L	M	L	Y	G	S	S	P	F	D	E	.	P	Q	A	T	A	S	R	L	Q	P	V	M	T	L	E	S	K	V
Template Known Secondary structure		S	T	T		S	S																T	T																	T	T	S			S					S	G	G	G	G	T					S	S	.			T	T	G	G	G
Template Predicted Secondary structure																																																															.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D	G	V	R	T	M	T	V	G	T	V	S	M	D	M	L	A	V	D	L	T	P	C	P	Q	A	G	I	G	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	C	V	R	E	L	P	A	G	E	P	V	G	Y	G	A	R	F	I	T	P	K	P	M	R	I	G	V	V	A	M	G	Y	A	D	G	Y	P	R	Q	A	P	T	G	T	P	V	F	V	D	G	V	R	S	Q	L	L	G	R	V	S	M	D	M	L	C	I	D	L	T	D	V	P	Q	A	G	L	G	S	T
Template Known Secondary structure									T	T		B		S	G	G	G			B		S	S								S			T	T	T	T			T	T			T	T						T	T					B		S				S	S							S	S		T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	L	W	G	K	E	I	K	I	D	D	V	A	A	A	A	G	T	V	G	Y	E	L	M	C	A	L	A	L	R	V	P	V	V	T	V
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		V	E	L	W	G	K	N	I	L	A	S	E	V	A	T	A	A	D	T	I	P	Y	Q	I	F	C	N	L	K	.	R	V	P	R	L	Y	S
Template Known Secondary structure						S	S	S	S									T	T	S								T			.	S	S
Template Predicted Secondary structure																															.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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