Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 37 Aligned Residues 305 % Identity 15% Template c2o0tB_ PDB info PDB header:lyase Chain: B: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: the three dimensional structure of diaminopimelate decarboxylase from2 mycobacterium tuberculosis reveals a tetrameric enzyme organisation Resolution 2.33 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80
Predicted Secondary structure																																																	.	.																								.
Query SS confidence																																																	.	.																								.
Query Sequence		P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	.	G	P	I	L	M	L	E
Query Conservation																																																	.	.																								.
Alig confidence						.																															.	.	.	.									.	.				.																				.
Template Conservation						.																															.	.	.	.														.
Template Sequence		P	L	F	V	.	I	D	E	D	D	F	R	S	R	C	R	E	T	A	A	A	F	G	S	G	A	N	V	H	Y	A	A	A	F	L	.	.	.	.	C	S	E	V	A	R	W	I	S	E	E	G	L	.	C	L	D	V	C	T	G	G	E	L	A	V	A	L	H	A	S	F	P	P	E	R	I	T	L	H	G
Template Known Secondary structure		S				.																	T	T	S	G	G	G	B								.	.	.	.												T		.						S										T	T			G	G	G
Template Predicted Secondary structure						.																															.	.	.	.														.
Template SS confidence
		41	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.															.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																		.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.														.	.
Query SS confidence																		.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.														.	.
Query Sequence		G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	.	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	K	A	P	L	D	I	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	N	S	G	M	.	.	N	R	L	G	F	Q	P	D	R	V	L	T	V	.	.
Query Conservation																		.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.														.	.
Alig confidence																		.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.														.	.
Template Conservation
Template Sequence		N	N	K	S	V	S	E	L	T	A	A	V	K	A	G	V	G	H	I	V	V	D	S	M	T	E	I	E	R	L	D	A	I	A	G	E	A	G	I	V	Q	D	V	L	V	R	L	T	V	G	V	E	A	H	T	H	E	F	I	S	T	A	H	E	D	Q	K	F	G	L	S	V	A	S	G	A	A	M	A	A
Template Known Secondary structure		S	S													T		S						S															T												S						T						S	S			S	S	S	S			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.												.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.																						.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence																								.																						.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		W	Q	Q	L	R	A	M	A	N	V	G	E	M	T	L	M	S	H	F	A	E	A	.	E	H	P	D	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	E	.	.	.	.	.	.	.	.	.	.	.	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	.	E	A	H	F	D	W	V	R	P
Query Conservation																								.																						.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence																								.																						.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation
Template Sequence		V	R	R	V	F	A	T	D	H	L	R	L	V	G	L	H	S	H	I	G	S	Q	I	F	D	V	D	G	F	E	L	A	A	H	R	V	I	G	L	L	R	D	V	V	G	E	F	G	P	E	K	T	A	Q	I	A	T	V	D	L	G	G	G	L	G	I	S	Y	L	P	S	D	D	P	P	P	I	A	E	L
Template Known Secondary structure									S	S																	S																										S	T	T										B				S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		209	210	.	.	.											.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	I	L	Y	.	.	.	.	.	.	.	.	.	.	G	A	S	P	S	G	Q	W	R	D	I	A	N	T	G	L	R	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R
Query Conservation							.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	K	L	G	T	I	V	S	D	E	S	T	A	V	G	L	P	T	P	K	L	V	V	E	P	G	R	A	I	A	G	P	G	T	I	T	L	Y	E	V	G	T	V	K	D	V	D	V	S	A	.	.	.	.	.	.	.	.	.	.	T	A	H	R	R	Y	V	S	V	D	G	G	M	S	D	N	I	R	T
Template Known Secondary structure																T	T								B			S					S	T	T																S	S	.	.	.	.	.	.	.	.	.	.	S									S			T	T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.											.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.									.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.														.	.
Query SS confidence												.	.	.	.	.	.	.	.														.	.
Query Sequence		H	A	P	T	G	T	P	V	L	V	.	.	.	.	.	.	.	.	D	G	V	R	T	M	T	V	G	T	V	S	M	.	.	D	M	L	A	V	D	L	T	P	C	P	Q	A	G	I	G	T	P	V	E	L	W	G
Query Conservation												.	.	.	.	.	.	.	.														.	.
Alig confidence												.	.	.	.	.	.	.	.														.	.
Template Conservation
Template Sequence		A	L	Y	G	A	Q	Y	D	V	R	L	V	S	R	V	S	D	A	P	P	V	P	A	R	L	V	G	K	H	C	E	S	G	D	I	I	V	R	D	T	W	V	P	D	D	I	R	P	G	D	L	V	A	V	A	A
Template Known Secondary structure														S	S				S										S	S	S	S	T	T											T	T			T	T						S
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions