Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 29 Aligned Residues 309 % Identity 12% Template c2nvaH_ PDB info PDB header:lyase Chain: H: PDB Molecule:arginine decarboxylase, a207r protein; PDBTitle: the x-ray crystal structure of the paramecium bursaria2 chlorella virus arginine decarboxylase bound to agmatine Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		M	T	R	P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I	L	M
Query Conservation																																																				.	.
Alig confidence									.																																.	.	.	.								.	.				.
Template Conservation									.																																.	.	.	.													.
Template Sequence		Q	T	K	S	F	Y	V	.	S	S	P	K	I	V	E	D	L	I	D	Q	W	T	I	L	F	P	R	V	T	P	H	Y	A	V	K	C	N	N	D	.	.	.	.	E	V	L	L	K	T	M	C	D	K	N	V	.	N	F	D	C	A	S	S	S	E	I	K	K	V	I	Q	I	G	V	S	P	S	R	I	I
Template Known Secondary structure				S					.																		T	T							G	G	G				.	.	.	.										T	T		.						S											T			G	G	G
Template Predicted Secondary structure									.																																.	.	.	.													.
Template SS confidence
		15	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.					.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		79	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.							.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure						.															.																																.	.	.	.	.	.
Query SS confidence						.															.																																.	.	.	.	.	.
Query Sequence		L	E	G	F	.	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	.	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	.	.	.	.	.	.	M	N	R	L	G	F	Q	P	D	R	V	L	T	V	W	Q	Q	L	R	A	M	A	N
Query Conservation						.															.																																.	.	.	.	.	.
Alig confidence						.															.																																.	.	.	.	.	.																					.
Template Conservation																																																																															.
Template Sequence		F	A	H	T	M	K	T	I	D	D	L	I	F	A	K	D	Q	G	V	D	I	A	T	F	D	S	S	F	E	L	D	K	I	H	T	Y	H	P	N	C	K	M	I	L	R	I	R	C	D	D	P	N	A	T	V	Q	L	G	N	K	F	G	A	N	E	D	E	I	R	H	L	L	E	Y	A	K	Q	.	L	D
Template Known Secondary structure					S	S													T								S												T	T							B					T	T		S	B			T	T	T	S	S	B		G	G	G											.	T	T
Template Predicted Secondary structure																																																																															.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.	.					200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																.																					.	.	.																.	.	.	.
Query SS confidence																.																					.	.	.																.	.	.	.
Query Sequence		V	G	E	M	T	L	M	S	H	F	A	E	A	E	.	H	P	D	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	E	.	.	.	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	.	.	.	.	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	Q	W	R
Query Conservation																.																					.	.	.																.	.	.	.
Alig confidence																.																					.	.	.																.	.	.	.
Template Conservation
Template Sequence		I	E	V	I	G	I	S	F	H	V	G	S	G	S	R	N	P	E	A	Y	Y	R	A	I	K	S	S	K	E	A	F	N	E	A	I	S	V	G	H	K	P	Y	I	L	D	I	G	G	G	L	H	A	D	I	G	E	L	S	T	M	S	D	Y	I	N	D	A	I	K	D	F	F	P	E	D	T	V	T	I	V
Template Known Secondary structure													B	S	B																								T												B																									T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
			223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.			.	.	.	.	.
Predicted Secondary structure		.																																																																									.	.
Query SS confidence		.																																																																									.	.
Query Sequence		.	D	I	A	N	T	G	L	R	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D	G	V	R	T	M	.	.	T	V	G	T	V
Query Conservation		.																																																																									.	.
Alig confidence		.																						.	.	.	.	.	.	.																																													.	.
Template Conservation																								.	.	.	.	.	.	.
Template Sequence		A	E	P	G	R	F	F	A	E	H	Y	S	V	L	A	T	Q	V	I	G	K	R	.	.	.	.	.	.	.	V	R	D	G	L	Y	E	Y	F	F	N	E	S	T	Y	G	G	F	S	N	V	I	F	E	K	S	V	P	T	P	Q	L	L	R	D	V	P	D	D	E	E	Y	V	P	S	V	L	Y	G	C	T
Template Known Secondary structure					S					G	G	G												.	.	.	.	.	.	.			T	T							S			T	T	T	T		T					S									S	S				T	T											S	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.								.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		S	M	.	.	D	M	L	A	V	D	L	T	P	C	P	Q	A	G	I	G	T	P	V	E	L	W	G
Query Conservation				.	.
Alig confidence				.	.								.
Template Conservation													.
Template Sequence		C	D	G	V	D	V	I	N	H	N	V	.	A	L	P	E	L	H	I	G	D	W	V	Y	F	P	S
Template Known Secondary structure		S		T	T								.							T	T						S	S
Template Predicted Secondary structure													.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions