Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 14 Aligned Residues 333 % Identity 32% Template c1xfcB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: the 1.9 a crystal structure of alanine racemase from mycobacterium2 tuberculosis contains a conserved entryway into the active site Resolution 1.90 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I	L	M	L	E	G	F
Query Conservation																																																.	.
Alig confidence																																																.	.
Template Conservation
Template Sequence		A	E	A	M	V	D	L	G	A	I	E	H	N	V	R	V	L	R	E	H	A	G	H	A	Q	L	M	A	V	V	K	A	D	G	Y	G	H	G	A	T	R	V	A	Q	T	A	L	G	A	G	A	A	E	L	G	V	A	T	V	D	E	A	L	A	L	R	A	D	G	I	T	A	P	V	L	A	W	L	H	P
Template Known Secondary structure																							T	T	S												T	T												T	T							S											T	T			S
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.																																		.	.	.
Query SS confidence																																		.	.																																		.	.	.
Query Sequence		F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	.	.	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	R	L	G	F	Q	P	D	R	V	L	T	V	W	Q	Q	L	R	A	.	.	.	M	A	N	V	G	E	M	T	L	M
Query Conservation																																		.	.																																		.	.	.
Alig confidence						.																												.	.																																		.	.	.
Template Conservation						.
Template Sequence		P	G	I	D	.	F	G	P	A	L	L	A	D	V	Q	V	A	V	S	S	L	R	Q	L	D	E	L	L	H	A	V	R	R	T	G	R	T	A	T	V	T	V	K	V	D	T	G	L	N	R	N	G	V	G	P	A	Q	F	P	A	M	L	T	A	L	R	Q	A	M	A	E	D	A	V	R	L	R	G	L	M
Template Known Secondary structure		T	T			.							T	T							S															T									B		S	S			S	S	S	B		T	T	T														T	T	S
Template Predicted Secondary structure						.
Template SS confidence
		92	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		158	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.							.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.																.	.	.	.	.	.
Query SS confidence													.	.																.	.	.	.	.	.
Query Sequence		S	H	F	A	E	A	E	H	P	D	G	.	.	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	.	.	.	.	.	.	E	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	Q	W	R	D	I	A	N	T	G	L
Query Conservation													.	.																.	.	.	.	.	.
Alig confidence													.	.																.	.	.	.	.	.																																								.	.	.
Template Conservation																																																																											.	.	.
Template Sequence		S	H	M	V	Y	A	D	K	P	D	D	S	I	N	D	V	Q	A	Q	R	F	T	A	F	L	A	Q	A	R	E	Q	G	V	R	F	E	V	A	H	L	S	N	S	S	A	T	M	A	R	P	D	L	T	F	D	L	V	R	P	G	I	A	V	Y	G	L	S	P	V	P	A	L	G	.	.	.	D	M	G	L
Template Known Secondary structure					S		S	S		T	T	S																				T	T				S														G	G	G			S						G	G	G	G	T			S	S	G	G	G		.	.	.	S	T	T
Template Predicted Secondary structure																																																																											.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.				.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D	G	V	R	T	M	T	V	G	T	V	S	M	D	M	L	A	V	D	L	T
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	A	M	T	V	K	C	A	V	A	L	V	K	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	T	N	L	A	L	L	P	I	G	Y	A	D	G	V	F	R	S	L	G	G	R	L	E	V	L	I	N	G	R	R	C	P	G	V	G	R	I	C	M	D	Q	F	M	V	D	L	G
Template Known Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S			G	G	G	T			G	G	G	T	T	T						T	T							S				S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.																.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure					.															.	.	.	.
Query SS confidence					.															.	.	.	.
Query Sequence		P	C	P	.	Q	A	G	I	G	T	P	V	E	L	W	G	K	E	.	.	.	.	I	K	I	D	D	V	A	A	A	A	G	T	V	G	Y	E	L	M	C	A	L	A	L	R	V	P	V	V	T	V
Query Conservation					.															.	.	.	.
Alig confidence					.															.	.	.	.
Template Conservation
Template Sequence		P	G	P	L	D	V	A	E	G	D	E	A	I	L	F	G	P	G	I	R	G	E	P	T	A	Q	D	W	A	D	L	V	G	T	I	H	Y	E	V	V	T	S	P	R	G	R	I	T	R	T	Y	R
Template Known Secondary structure		S	S	S					T	T								S	S	T	T	S												T	S							T				T	T
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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