Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 21 Aligned Residues 301 % Identity 14% Template c1njjC_ PDB info PDB header:lyase Chain: C: PDB Molecule:ornithine decarboxylase; PDBTitle: crystal structure determination of t. brucei ornithine2 decarboxylase bound to d-ornithine and to g418 Resolution 2.45 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I	L	M	L	E	G
Query Conservation																																																	.	.
Alig confidence						.																															.	.	.	.									.	.				.
Template Conservation						.																															.	.	.	.														.
Template Sequence		P	F	F	V	.	A	D	L	G	D	I	V	R	K	H	E	T	W	K	K	C	L	P	R	V	T	P	F	Y	A	V	K	C	N	D	.	.	.	.	D	W	R	V	L	G	T	L	A	A	L	G	T	.	G	F	D	C	A	S	N	T	E	I	Q	R	V	R	G	I	G	V	P	P	E	K	I	I	Y	A	N
Template Known Secondary structure						.																		T	T							G	G	G			.	.	.	.											T	T		.						S										T	T			G	G	G
Template Predicted Secondary structure						.																															.	.	.	.														.
Template SS confidence
		39	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		82		.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.															.
Query SS confidence			.															.
Query Sequence		F	.	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	.	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	R	L	G	F	Q	P	D	R	V	L	T	V	W	Q	Q	L	R	A	M	A	N	V	G	E	M	T	L	M	S	H
Query Conservation			.															.
Alig confidence			.															.																					.	.	.	.																													.
Template Conservation																																							.	.	.	.																													.
Template Sequence		P	C	K	Q	I	S	H	I	R	Y	A	R	D	S	G	V	D	V	M	T	F	D	C	V	D	E	L	E	K	V	A	K	T	H	P	K	A	.	.	.	.	K	M	V	L	R	I	S	T	V	K	F	G	A	K	V	E	D	C	R	F	I	L	E	Q	A	K	K	L	.	N	I	D	V	T	G	V	S	F	H
Template Known Secondary structure		S	S													T								S												T	T		.	.	.	.						B					S		B		G	G	G											T	.	T
Template Predicted Secondary structure																																							.	.	.	.																													.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.
		160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.							.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure							.																				.	.	.	.	.	.																																.	.	.															.
Query SS confidence							.																				.	.	.	.	.	.																																.	.	.															.
Query Sequence		F	A	E	A	E	.	H	P	D	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	.	.	.	.	.	.	E	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	.	.	.	A	S	P	S	G	Q	W	R	D	I	A	N	T	G	.
Query Conservation							.																				.	.	.	.	.	.																																.	.	.															.
Alig confidence							.																				.	.	.	.	.	.																																.	.	.															.
Template Conservation
Template Sequence		V	G	S	G	S	T	D	A	S	T	F	A	Q	A	I	S	D	S	R	F	V	F	D	M	G	T	E	L	G	F	N	M	H	I	L	D	I	G	G	G	F	P	G	T	R	D	A	P	L	K	F	E	E	I	A	G	V	I	N	N	A	L	E	K	H	F	P	P	D	L	K	L	T	I	V	A	E	P	G	R
Template Known Secondary structure				S			S		T																				T	T														S	S	T	T	S	S	S																	S				T	T								S
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
				229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.
Predicted Secondary structure		.	.																																																																										.	.
Query SS confidence		.	.																																																																										.	.
Query Sequence		.	.	L	R	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D	G	V	R	T	M	T	V	G	T	V	S	M	.	.	D	M	L
Query Conservation		.	.																																																																										.	.
Alig confidence		.	.																.	.	.	.	.	.	.																																					.															.	.
Template Conservation																			.	.	.	.	.	.	.																																					.
Template Sequence		Y	Y	V	A	S	A	F	T	L	A	V	N	V	I	A	K	K	.	.	.	.	.	.	.	V	T	Q	S	F	M	Y	Y	V	N	D	G	V	Y	G	S	F	N	C	I	L	Y	D	H	A	V	V	R	P	L	P	Q	R	E	P	I	.	E	K	L	Y	P	S	S	V	W	G	P	T	C	D	G	L	D	Q	I
Template Known Secondary structure					G	G	G												.	.	.	.	.	.	.	B				B					S			T	T	T	G	G	G					S									S	S				.											S	S	S		T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.																																					.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.								.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	D	L	T	P	C	P	Q	A	G	I	G	T	P	V	E	L	W	G
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		V	E	R	Y	Y	.	L	P	E	M	Q	V	G	E	W	L	L	F	E	D
Template Known Secondary structure							.						T	T							S
Template Predicted Secondary structure							.
Template SS confidence
		367	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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