Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 1 Aligned Residues 352 % Identity 33% Template c1niuA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: alanine racemase with bound inhibitor derived from l-2 cycloserine Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																												.																									.	.
Query SS confidence																												.																									.	.
Query Sequence		M	T	R	P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	.	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I	L
Query Conservation																												.																									.	.
Alig confidence																												.																									.	.
Template Conservation
Template Sequence		F	H	R	D	T	W	A	E	V	D	L	D	A	I	Y	D	N	V	E	N	L	R	R	L	L	P	D	D	T	H	I	M	A	V	V	K	A	N	A	Y	G	H	G	D	V	Q	V	A	R	T	A	L	E	A	G	A	S	R	L	A	V	A	F	L	D	E	A	L	A	L	R	E	K	G	I	E	A	P	I	L
Template Known Secondary structure				S	S																					S		T	T	S													T													T							S	S										T	T			S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		M	L	E	G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	R	L	G	F	Q	P	D	R	.	V	L	T	V	W	Q	Q	L	R	A	M	A	N	V	G	E	M	T	L
Query Conservation																																																														.
Alig confidence											.																																																			.
Template Conservation											.
Template Sequence		V	L	G	A	S	R	P	A	D	.	A	A	L	A	A	Q	Q	R	I	A	L	T	V	F	R	S	D	W	L	E	E	A	S	A	L	Y	S	G	P	F	P	I	H	F	H	L	M	D	T	G	M	G	R	L	G	V	K	D	E	E	E	T	K	R	I	V	A	L	I	E	R	H	P	H	F	V	L	E	G	L
Template Known Secondary structure				S				G	G	G	.							T	T																T	T				S	S									S	S			S	S	S			S														S	T	T
Template Predicted Secondary structure											.
Template SS confidence
		84	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		157	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure														.	.																	.	.	.
Query SS confidence														.	.																	.	.	.
Query Sequence		M	S	H	F	A	E	A	E	H	P	D	G	.	.	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	E	.	.	.	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	Q	W	R	D	I	A	N	T	G	L	R	P
Query Conservation														.	.																	.	.	.
Alig confidence														.	.																	.	.	.
Template Conservation
Template Sequence		Y	T	H	F	A	T	A	D	E	V	N	T	D	Y	F	S	Y	Q	Y	T	R	F	L	H	M	L	E	W	L	P	S	R	P	P	L	V	H	C	A	N	S	A	A	S	L	R	F	P	D	R	T	F	N	M	V	R	F	G	I	A	M	Y	G	L	A	P	S	P	G	I	K	P	L	L	P	Y	P	L	K	E
Template Known Secondary structure						S	S	T	T	S	S																	T	T	S	S	S			S														G	G	G		T	T						G	G	G	G	T			S		S	T	T	G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D	G	V	R	T	M	T	V	G	T	V	S	M	D	M	L	A	V	D	L	T	P	C
Query Conservation
Alig confidence																																																					.																												.
Template Conservation																																																					.																												.
Template Sequence		A	F	S	L	H	S	R	L	V	H	V	K	K	L	Q	P	G	E	K	V	S	Y	G	A	T	Y	T	A	Q	T	E	E	W	I	G	T	I	P	I	G	Y	A	D	G	W	L	R	R	L	Q	H	.	F	H	V	L	V	D	G	Q	K	A	P	I	V	G	R	I	C	M	D	Q	C	M	I	R	L	P	G	.
Template Known Secondary structure																	T	T				S	G	G	G						S	S							S			G	G	G	T			G	G	G	G	G	.						T	T							S				S	S							S	S	.
Template Predicted Secondary structure																																																					.																												.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		P	Q	A	G	I	G	T	P	V	E	L	W	G	K	E	.	.	.	.	I	K	I	D	D	V	A	A	A	A	G	T	V	G	Y	E	L	M	C	A	L	A	L	R	V	P	V	V	T	V
Query Conservation																	.	.	.	.
Alig confidence		.															.	.	.	.
Template Conservation		.
Template Sequence		.	P	L	P	V	G	T	K	V	T	L	I	G	R	Q	G	D	E	V	I	S	I	D	D	V	A	R	H	L	E	T	I	N	Y	E	V	P	C	T	I	S	Y	R	V	P	R	I	F	F
Template Known Secondary structure		.				T	T										T	T													T	S		T	T						S		T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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