Job Description P29012 Confidence 99.97% Date Thu Jan 5 11:45:32 GMT 2012 Rank 38 Aligned Residues 296 % Identity 15% Template c1knwA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.						.	.
Predicted Secondary structure																																																	.	.																									.	.	.	.	.
Query SS confidence																																																	.	.																									.	.	.	.	.
Query Sequence		P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	.	.	.	.	.	P	I
Query Conservation																																																	.	.																									.	.	.	.	.
Alig confidence						.																		.	.	.											.	.	.	.									.	.				.																					.	.	.	.	.
Template Conservation						.																		.	.	.											.	.	.	.														.
Template Sequence		P	V	W	V	.	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	D	.	.	.	V	V	R	F	A	Q	K	A	C	S	.	.	.	.	N	I	H	I	L	R	L	M	R	E	Q	G	V	.	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P	D	D	I
Template Known Secondary structure		S				.												T	T	T	T	S	S	.	.	.						G	G	G			.	.	.	.											T	T		.						S										T	T			T	T	T		T	T	S
Template Predicted Secondary structure						.																		.	.	.											.	.	.	.														.
Template SS confidence
		27	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.													130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	M	L	E	G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	.	.	.	.	.	.	.	.	.	.	.	.	R	L	G	F	Q	P	D	R	V	L	T	V	W	Q	Q
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	W	Y	T	D	L	P	A	A	L	D	V
Template Known Secondary structure						S														T						S	S											S	T	T										S			S	S		T	T	S			S	S	S	T	T				S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.											200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	A	M	A	N	V	G	E	M	T	L	M	S	H	F	A	E	A	E	H	P	D	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	E	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	.	.	.	.	.	.	.	.	.	.	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.
Alig confidence					.																																																				.	.	.	.	.	.	.	.	.	.
Template Conservation					.
Template Sequence		I	Q	R	.	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N	A	A	R	E	Q	I	A
Template Known Secondary structure					.	T	T													T	T																				T				S													S	T	T
Template Predicted Secondary structure					.
Template SS confidence
		178	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.																																																													.	.	.
Query SS confidence																.	.	.																																																													.	.	.
Query Sequence		A	S	P	S	G	Q	W	R	D	I	A	N	T	G	.	.	.	L	R	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	.	.	.
Query Conservation																.	.	.																																																													.	.	.
Alig confidence																.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S	A	L	A
Template Known Secondary structure					T	S									S					G	G	G														T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							S			T	T	T	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.																.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
											289	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310							.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	D	G	V	R	T	M	T	V	G	T	V	S	M	.	.	D	M	L	A	V	D	L	T	P	.	.	.	.	.	.	C	P	Q	A	G	I	G	T	P	V	E	L	W	G
Query Conservation		.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L	H	D
Template Known Secondary structure		T	T					T	T											S	S	S	S	T	T		B	S	S	B		T	T	S		B										T	T							S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions