Job Description P29012 Confidence 99.94% Date Thu Jan 5 11:45:32 GMT 2012 Rank 42 Aligned Residues 287 % Identity 13% Template c1d7kB_ PDB info PDB header:lyase Chain: B: PDB Molecule:human ornithine decarboxylase; PDBTitle: crystal structure of human ornithine decarboxylase at 2.12 angstroms resolution Resolution 2.10 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.
Predicted Secondary structure																																																		.	.																								.
Query SS confidence																																																		.	.																								.
Query Sequence		R	P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	.	G	P	I	L	M	L
Query Conservation																																																		.	.																								.
Alig confidence							.																										.					.	.	.	.									.	.				.																				.
Template Conservation							.																										.					.	.	.	.														.
Template Sequence		D	A	F	Y	V	.	A	D	L	G	D	I	L	K	K	H	L	R	W	L	K	A	L	P	R	V	T	P	F	Y	A	.	V	C	N	D	.	.	.	.	S	K	A	I	V	K	T	L	A	A	T	G	T	.	G	F	D	C	A	S	K	T	E	I	Q	L	V	Q	S	L	G	V	P	P	E	R	I	I	Y	A
Template Known Secondary structure							.																		T	T							.					.	.	.	.										T	T	T		.						S									T	T	T			G	G	G
Template Predicted Secondary structure							.																										.					.	.	.	.														.
Template SS confidence
		38	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.					.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.							.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																			.																																	.	.	.	.	.	.
Query SS confidence																			.																																	.	.	.	.	.	.
Query Sequence		E	G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	.	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	.	.	.	.	.	.	N	R	L	G	F	Q	P	D	R	V	L	T	V	W	Q	Q	L	R	A	M	A	N	V	G
Query Conservation																			.																																	.	.	.	.	.	.
Alig confidence																			.																																	.	.	.	.	.	.																				.
Template Conservation																																																																													.
Template Sequence		N	P	C	K	Q	V	S	Q	I	K	Y	A	A	N	N	G	V	Q	M	M	T	F	D	S	E	V	E	L	M	K	V	A	R	A	H	P	K	A	K	L	V	L	R	I	A	T	D	D	S	K	A	V	C	R	L	S	V	K	F	G	A	T	L	R	T	S	R	L	L	L	E	R	A	K	E	.	L	N	I	D
Template Known Secondary structure			S	S												T	T								S												T	T							B				S			S	S			S	S		S	S		B															.		T
Template Predicted Secondary structure																																																																													.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190
		153	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure													.																																																																	.	.	.	.
Query SS confidence													.																																																																	.	.	.	.
Query Sequence		E	M	T	L	M	S	H	F	A	E	A	.	E	H	P	D	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	E	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	Q	W	R	D	I	A	N	T	.	.	.	.
Query Conservation													.																																																																	.	.	.	.
Alig confidence													.																								.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.															.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Sequence		V	V	G	V	S	F	H	V	G	S	G	C	T	D	P	E	T	F	V	Q	A	I	S	D	A	R	C	V	F	D	M	G	A	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	S	M	Y	L	L	D	I	G	.	.	.	.	G	G	F	P	G	S	E	D	V	K	L	K	F	E	E	I	T	G
Template Known Secondary structure											S			S		T																			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T										.	.	.	.					S	S	S		S	S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.														.	.	.	.	230	.	.	.	.	.					.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
																											228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	R	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.
Template Sequence		V	I	N	P	A	L	D	K	Y	F	P	S	D	S	G	V	R	I	I	A	E	P	G	R	Y	Y	V	A	S	A	F	T	L	A	V	N	I	I	A	K	K	I	V	L	K	E	.	.	.	.	.	.	.	.	.	Q	S	S	E	Q	T	F	M	Y	Y	V	N	D	G	V	Y	G	S	F	N	C	I	L	Y	D
Template Known Secondary structure											S		G	G	G									S					T	T	T																	.	.	.	.	.	.	.	.	.					S							S			T	T	T	G	G	G					S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.										300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		283	.	.	.	.	.											.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.														.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.														.	.
Query Sequence		G	T	P	V	L	V	.	.	.	.	.	.	.	.	.	.	D	G	V	R	T	M	T	V	G	T	V	S	M	.	.	D	M	L	A	V	D	L	T	P	C	P	Q	A	G	I	G	T	P	V	E	L	W	G
Query Conservation								.	.	.	.	.	.	.	.	.	.														.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.														.	.									.
Template Conservation																																									.
Template Sequence		H	A	H	V	K	P	L	L	Q	K	R	P	K	P	D	E	R	Y	Y	S	S	S	I	W	G	P	T	C	D	G	L	D	R	I	V	E	R	C	D	.	L	P	E	M	H	V	G	D	W	M	L	F	E	N
Template Known Secondary structure											S				T	T											S	S	S		T	T									.						T	T							S
Template Predicted Secondary structure																																									.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions