Job Description P0CF62 Confidence 99.69% Date Thu Jan 5 11:31:18 GMT 2012 Rank 9 Aligned Residues 144 % Identity 17% Template c3kksB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii Resolution 2.20 Å

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	W	C	S	D	G	F	E	F	C	C	D	N	G	E	R	L	R	V	T	F	A	L	D	C	C	D	R	E	A	L	H	W	A	V	T	T	G	G	F	N	S	E	T	V	Q	D	V	M	L	G	A	V	E	R	R	F	G	N	D	L	P	S	S	P	V	E	W	L	T	D	N	G	S	C	Y	R	A	N
Query Conservation
Alig confidence												.	.	.	.	.																																									.	.	.	.	.	.	.	.					.
Template Conservation												.	.	.	.	.																																									.	.	.	.	.	.	.	.					.
Template Sequence		H	L	W	Q	M	D	N	T	H	W	.	.	.	.	.	N	K	T	I	I	W	V	A	V	E	T	N	S	G	L	V	E	A	Q	V	I	P	E	E	T	A	L	Q	V	A	L	C	I	L	Q	L	I	Q	R	Y	.	.	.	.	.	.	.	.	T	V	L	H	.	L	H	S	D	N	G	P	C	F	T	A	H
Template Known Secondary structure												.	.	.	.	.	T	T									T	T	T	T								S	S	S																S	.	.	.	.	.	.	.	.			S		.					S						S
Template Predicted Secondary structure												.	.	.	.	.																																									.	.	.	.	.	.	.	.					.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.									.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		E	T	R	Q	F	A	R	M	L	G	L	E	P	K	N	T	A	V	R	S	P	E	S	N	G	I	A	E	S	F	V	K	T	I	K	R	D	Y	I	S	I	M	P	K	P	D	G	L	T	A	A	K	N	L	A	E	A	F	E	H	Y	N	E	W	H	P	H	S	A	L	G	Y	R	S	P	R	E	.	Y	L
Query Conservation																																																																															.
Alig confidence																																																.	.															.	.														.
Template Conservation																																																.	.															.	.
Template Sequence		R	I	E	N	L	C	K	Y	L	G	I	T	K	T	T	G	I	P	Y	N	P	Q	S	Q	G	V	V	E	R	A	H	R	D	L	K	D	R	L	A	A	Y	Q	G	D	C	E	.	.	T	V	E	A	A	L	S	L	A	L	V	S	L	N	.	.	K	K	R	G	G	I	G	G	H	T	P	Y	E	I	Y	L
Template Known Secondary structure										T	T						S	S		S																							G	G	G		S	.	.	S														.	.		S				G	G	G
Template Predicted Secondary structure																																																.	.															.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		292	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		201	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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