Return to main results Retrieve Phyre Job Id

Job DescriptionP63284
Confidence100.00%DateThu Jan 5 12:08:03 GMT 2012
Rank9Aligned Residues278
% Identity20%Templated1um8a_
SCOP infoP-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain
Resolution2.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   554.....560.........570.........580.... .....590.........600.........610..
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Query Sequence  SEREKLLRMEQELHHRVIGQNEAVDAVSNAI. . . . . . . . . . . . . . . . . . . . . RRSRAGLADPNRPIGSFLFLGPTGVGKT
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Template Sequence  SYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKT
Template Known Secondary structure  S



TT

S

STT






TTSS
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   77..80.........90.........100.........110.........120.........130.........140.........150......
 
   613......620.........630.........640.........650.........660.........670.........680.........690..
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Query Sequence  ELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQ
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Template Sequence  LMAQTLAKHL. . . DIPIAISDATSLTVENILTRLLQASDWN. . . . . . . . . . . . VQKAQKGIVFIDEIDKIGEGVQQALLK
Template Known Secondary structure  T...T

GGG


TTTT
............TTSTGGG

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   157..160...... ...170.........180.........190.... .....200.........210.........220.
 
   693......700.........710......... 720.........730.........740.........750.........760.
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Query Sequence  VLDDGRLTDGQGRTVDFRNTVVIMTSN. . . . . . . . . . . LGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVV
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Template Sequence  IVEGSLVNQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLS
Template Known Secondary structure 




TT


TTTTTS
SS


S


SS

TTTTTTSGGG

TT

TT

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   244.....250.........260.........270.........280.........290.........300.........310.........320...
 
   762.......770....... ..780.........790.........800.........810.........820.........830.......
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Query Sequence  VFHPLGEQHIASIAQI. . . . QLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGE
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Template Sequence  TLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFD. . . . LP
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SSTT
TTT

TT
TGGGT....GG
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   339340.........350.........360.........370.........380.........390.........400.........410.. ..
 
   838.840.........850
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Query Sequence  LVPGKVIRLEVNE
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Template Sequence  KLKGSEVRITKDC
Template Known Secondary structure  GGTTS
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   415....420.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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