Job Description P63284 Confidence 99.73% Date Thu Jan 5 12:08:03 GMT 2012 Rank 59 Aligned Residues 193 % Identity 17% Template c3u5zM_ PDB info PDB header:dna binding protein/dna Chain: M: PDB Molecule:dna polymerase accessory protein 44; PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog Resolution 3.50 Å

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		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	V	I	G	Q	N	E	A	V	D	A	V	S	N	A	I	R	R	S	R	A	G	L	A	D	P	N	R	P	I	G	S	F	L	F	L	G	P	T	G	V	G	K	T	E	L	C	K	A	L	A	N	F	M	F	D	S	D	E	A	M	V	R	I	D	M	S	E	F	M	E	K	H	S	V	S	R	L	V
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.																														.	.	.
Template Conservation																				.	.	.	.	.	.	.	.																														.	.	.
Template Sequence		D	E	C	I	L	P	A	F	D	K	E	T	F	K	S	I	T	S	.	.	.	.	.	.	.	.	K	G	K	I	P	H	I	I	L	H	S	P	S	P	G	T	G	K	T	T	V	A	K	A	L	C	H	D	V	.	.	.	N	A	D	M	M	F	V	N	G	S	D	C	K	I	D	F	V	R	G	P	L	T
Template Known Secondary structure		T	T	S																.	.	.	.	.	.	.	.		S	S									S	S	S		S	S												T	.	.	.	T								G	G	G								T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.																														.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.									.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		648	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	P	P	G	Y	V	G	Y	E	E	G	G	Y	L	T	E	A	V	R	R	R	P	Y	S	V	I	L	L	D	E	V	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	L	D	D	G	R	L	T	D	G	Q	G	R	T	V	D	F	R	N	T	V	V	I	M	T	S	N	L	G	S	D	L	I	Q	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	N	F	A	S	A	A	S	F	D	G	R	Q	K	V	I	V	I	D	E	F	D	R	S	G	L	A	E	S	Q	R	H	L	R	S	F	.	.	.	.	.	.	.	.	.	.	M	E	A	Y	S	S	N	C	S	I	I	I	T	A	N	N	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.					S			T	T										S				G	G	G											.	.	.	.	.	.	.	.	.	.				T	T	T	T								S		.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
														90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.											.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		728	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	G	E	L	D	Y	A	H	M	K	E	L	V	L	G	V	V	S	H	N	F	R	P	E	F	I	N	R	I	D	E	V	V	V	F	H	P	L	G	E	Q	H	I	A	S	I	A	Q	I	Q	L	K	R	L	Y	K	R	L	E	E	R	G	Y	E	I	H	I	S	D	E	A	L	K	L	L	S	E	N	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																																				.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																																				.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	G	I	I	K	P	L	Q	S	R	C	.	R	V	I	T	F	G	Q	P	T	D	E	D	K	I	E	M	M	K	Q	M	I	R	R	L	T	E	I	C	K	H	E	G	I	A	I	.	A	D	M	K	V	V	A	A	L	V	K	K	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	S								S	.					T	T																										T				.	S		S										T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																																				.
Template SS confidence
																				141	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200
		808	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	P	V	Y	G	A	R	P	L	K	R	A	I	Q	Q
Query Conservation
Alig confidence			.	.	.
Template Conservation			.	.	.
Template Sequence		F	.	.	.	P	D	F	R	K	T	I	G	E	L	D	S
Template Known Secondary structure			.	.	.	S
Template Predicted Secondary structure			.	.	.
Template SS confidence
		201				.	.	.	.	.	.	.	.	210	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions