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Job DescriptionP63284
Confidence100.00%DateThu Jan 5 12:08:03 GMT 2012
Rank2Aligned Residues698
% Identity50%Templatec3pxiB_
PDB info PDB header:protein bindingChain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb; PDBTitle: structure of meca108:clpc
Resolution6.93 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  LDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQ
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Template Sequence  FGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQT. . . IH
Template Known Secondary structure 


B
TT
S
S

ST

TTS



TT
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   3......10.........20.........30.........40.........50.........60.........70....... ..
 
   83......90.........100.........110.........120. ........130.........140.........150.........160
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Query Sequence  PSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGT. . LADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA
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Template Sequence  YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLI. REGEGVAARVLNNLGVSLNKARQQVLQLL. . . . . . GSNSNANTPT
Template Known Secondary structure 
TTT
SSB
.T

STT

TT
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TT
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   80.........90.........100.........110... ......120.........130.........140.. .......150..
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL
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Template Conservation         
   
      

 

  

  
  

 
  
 
 



 

 


 

  

  
    

  
    
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Template Sequence  LDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV. . .
Template Known Secondary structure  TSTTT
BTTSS





S
STT
SSS
SSSSSSSTSS


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   163......170.........180.........190.........200.........210.........220.........230.........
 
   241........250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR
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Template Sequence  . . . . . . . . . . . . MTLEDRLKKVMDEIRQAG. NIILFIDA. . . . . . . . . . . . . . . . . . . . KPSLARGELQCIGATTLDEYR
Template Known Secondary structure  ............


TTTTTTT

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SS


TTTT
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   240.........250....... ..260..... ....270.........280......
 
   321........330.........340.........350.........360.........370.........380.........390.........400
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Query Sequence  QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS
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Template Sequence  KYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK
Template Known Secondary structure  TT
SSSSSS





GGGSS
S

SS

S
TT
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   322.......330.........340.........350.........360.........370.........380.........390.........400.
 
   401........410.........420.........430.........440.........450.........460.........470.........480
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Query Sequence  IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE
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Template Sequence  VRLRSF. . TPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQ. . . . . . . . . . . . . . .
Template Known Secondary structure 
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TTTT

STTTGGGT...............
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   402..... ..410.........420.........430.........440.........450.........460....
 
   481........490.........500.........510.........520.........530.........540.........550.........560
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Query Sequence  QAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLL
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Template Conservation  ................................................       
  
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EEVTVDDIAMVVSSWTA. . . . . . . QTETDKLL
Template Known Secondary structure  ................................................


T

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   467..470.........480... ......490.
 
   561........570.........580.........590.........600.........610.........620.........630.........640
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Query Sequence  RMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEK
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Template Sequence  NMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK
Template Known Secondary structure  TTTS
S
TTT
S
TTS
SS
TTSSS
TT
GGGG
SS
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   501........510.........520.........530.........540.........550.........560.........570.........580
 
   641........650.........660.........670.........680.........690.........700.........710.........720
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Query Sequence  HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
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Template Sequence  HS. . . . . . . . . . . . . . . . . TSLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTT. . . . . VDFRNTILIMTSNV
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SSS
GGGS
SB


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B
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   581. .......590.........600.........610.........620.... .....630........
 
   721........730.........740.........750.........760.........770.........780.........790.........800
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Query Sequence  GSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEAL
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Template Sequence  GAS. . . . . . . . . . . . . EKDKVMGELKRAFRPEFINRIDEIIVFHEK. . KHLTEIVSLMSDQLTKRLKEQDLSIELTDAAK
Template Known Secondary structure  STT.............

S
TTSS


..TTT

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   661.. ......670.........680.........690... ......700.........710.........720.....
 
   801........810.........820.........830.........840.........850.....
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Query Sequence  KLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVA
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Template Conservation    
         


 
   
   
   
   

           
         
Template Sequence  AKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVEDGEFVV
Template Known Secondary structure  GGG

TTTTTTTTTT
S
SSSSSSS
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   749750.........760.........770.........780.........790.........800...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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