Job Description P63284 Confidence 100.00% Date Thu Jan 5 12:08:03 GMT 2012 Rank 2 Aligned Residues 698 % Identity 50% Template c3pxiB_ PDB info PDB header:protein binding Chain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb; PDBTitle: structure of meca108:clpc Resolution 6.93 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	R	L	T	N	K	F	Q	L	A	L	A	D	A	Q	S	L	A	L	G	H	D	N	Q	F	I	E	P	L	H	L	M	S	A	L	L	N	Q	E	G	G	S	V	S	P	L	L	T	S	A	G	I	N	A	G	Q	L	R	T	D	I	N	Q	A	L	N	R	L	P	Q	V	E	G	T	G	G	D	V	Q
Query Conservation
Alig confidence																																																																													.	.	.
Template Conservation																																																																													.	.	.
Template Sequence		F	G	R	F	T	E	R	A	Q	K	V	L	A	L	A	Q	E	E	A	L	R	L	G	H	N	N	I	G	T	E	H	I	L	L	G	L	V	R	E	G	E	G	I	A	A	K	A	L	Q	A	L	G	L	G	S	E	K	I	Q	K	E	V	E	S	L	I	G	R	G	Q	E	M	S	Q	T	.	.	.	I	H
Template Known Secondary structure					B																		T	T		S														S			S										T												T	T	S					T	T		S	S	.	.	.
Template Predicted Secondary structure																																																																													.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		P	S	Q	D	L	V	R	V	L	N	L	C	D	K	L	A	Q	K	R	G	D	N	F	I	S	S	E	L	F	V	L	A	A	L	E	S	R	G	T	.	.	L	A	D	I	L	K	A	A	G	A	T	T	A	N	I	T	Q	A	I	E	Q	M	R	G	G	E	S	V	N	D	Q	G	A	E	D	Q	R	Q	A
Query Conservation																																									.	.
Alig confidence																																				.					.	.																								.	.	.	.	.	.
Template Conservation																																				.																														.	.	.	.	.	.
Template Sequence		Y	T	P	R	A	K	K	V	I	E	L	S	M	D	E	A	R	K	L	G	H	S	Y	V	G	T	E	H	I	L	L	G	L	I	.	R	E	G	E	G	V	A	A	R	V	L	N	N	L	G	V	S	L	N	K	A	R	Q	Q	V	L	Q	L	L	.	.	.	.	.	.	G	S	N	S	N	A	N	T	P	T
Template Known Secondary structure																			T	T	T		S	S	B											.		T			S									T	T												T	T		.	.	.	.	.	.					T	T
Template Predicted Secondary structure																																				.																														.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.							.	.	.	.	.	.	.	150	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	K	Y	T	I	D	L	T	E	R	A	E	Q	G	K	L	D	P	V	I	G	R	D	E	E	I	R	R	T	I	Q	V	L	Q	R	R	T	K	N	N	P	V	L	I	G	E	P	G	V	G	K	T	A	I	V	E	G	L	A	Q	R	I	I	N	G	E	V	P	E	G	L	K	G	R	R	V	L	A	L
Query Conservation
Alig confidence																																																																															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		L	D	S	L	A	R	D	L	T	A	I	A	K	E	D	S	L	D	P	V	I	G	R	S	K	E	I	Q	R	V	I	E	V	L	S	R	R	T	K	N	N	P	V	L	I	G	E	P	G	V	G	K	T	A	I	A	E	G	L	A	Q	Q	I	I	N	N	E	V	P	E	I	L	R	D	K	R	V	.	.	.
Template Known Secondary structure		T	S	T	T	T		B					T	T	S	S							S		S										T	T		S	S	S		S					S	S	S	S	S	S	T													S	S				S	S			S				.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	G	A	L	V	A	G	A	K	Y	R	G	E	F	E	E	R	L	K	G	V	L	N	D	L	A	K	Q	E	G	N	V	I	L	F	I	D	E	L	H	T	M	V	G	A	G	K	A	D	G	A	M	D	A	G	N	M	L	K	P	A	L	A	R	G	E	L	H	C	V	G	A	T	T	L	D	E	Y	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																			.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																			.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	M	T	L	E	D	R	L	K	K	V	M	D	E	I	R	Q	A	G	.	N	I	I	L	F	I	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	S	L	A	R	G	E	L	Q	C	I	G	A	T	T	L	D	E	Y	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.					T	T						T	T	T	T	T			.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S										T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																			.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.																					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	I	E	K	D	A	A	L	E	R	R	F	Q	K	V	F	V	A	E	P	S	V	E	D	T	I	A	I	L	R	G	L	K	E	R	Y	E	L	H	H	H	V	Q	I	T	D	P	A	I	V	A	A	A	T	L	S	H	R	Y	I	A	D	R	Q	L	P	D	K	A	I	D	L	I	D	E	A	A	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Y	I	E	K	D	A	A	L	E	R	R	F	Q	P	I	Q	V	D	Q	P	S	V	D	E	S	I	Q	I	L	Q	G	L	R	D	R	Y	E	A	H	H	R	V	S	I	T	D	D	A	I	E	A	A	V	K	L	S	D	R	Y	I	S	D	R	F	L	P	D	K	A	I	D	L	I	D	E	A	G	S	K
Template Known Secondary structure					T	T		S	S	S	S	S	S																										G	G	G	S	S		S																S	S			S		T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	M	Q	I	D	S	K	P	E	E	L	D	R	L	D	R	R	I	I	Q	L	K	L	E	Q	Q	A	L	M	K	E	S	D	E	A	S	K	K	R	L	D	M	L	N	E	E	L	S	D	K	E	R	Q	Y	S	E	L	E	E	E	W	K	A	E	K	A	S	L	S	G	T	Q	T	I	K	A	E	L	E
Query Conservation
Alig confidence								.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	R	L	R	S	F	.	.	T	P	N	L	K	E	L	E	Q	K	L	D	E	V	R	K	E	K	D	A	A	V	Q	S	Q	E	F	E	K	A	A	S	L	R	D	T	E	Q	R	L	R	E	Q	V	E	D	T	K	K	S	W	K	E	K	Q	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								.	.				T	T																		T	T			S																			T	T	T	G	G	G						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		402	.	.	.	.	.			.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	K	I	A	I	E	Q	A	R	R	V	G	D	L	A	R	M	S	E	L	Q	Y	G	K	I	P	E	L	E	K	Q	L	E	A	A	T	Q	L	E	G	K	T	M	R	L	L	R	N	K	V	T	D	A	E	I	A	E	V	L	A	R	W	T	G	I	P	V	S	R	M	M	E	S	E	R	E	K	L	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	V	T	V	D	D	I	A	M	V	V	S	S	W	T	A	.	.	.	.	.	.	.	Q	T	E	T	D	K	L	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T														.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template SS confidence
																																																		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.								.	.	.	.	.	.	490	.
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	E	Q	E	L	H	H	R	V	I	G	Q	N	E	A	V	D	A	V	S	N	A	I	R	R	S	R	A	G	L	A	D	P	N	R	P	I	G	S	F	L	F	L	G	P	T	G	V	G	K	T	E	L	C	K	A	L	A	N	F	M	F	D	S	D	E	A	M	V	R	I	D	M	S	E	F	M	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	M	E	N	I	L	H	S	R	V	I	G	Q	D	E	A	V	V	A	V	A	K	A	V	R	R	A	R	A	G	L	K	D	P	K	R	P	I	G	S	F	I	F	L	G	P	T	G	V	G	K	T	E	L	A	R	A	L	A	E	S	I	F	G	D	E	E	S	M	I	R	I	D	M	S	E	Y	M	E	K
Template Known Secondary structure		T							T	T	S		S																T	T	T		S		T	T	S		S							S		T	T	S	S														S		T	T							G	G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
		641	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	V	S	R	L	V	G	A	P	P	G	Y	V	G	Y	E	E	G	G	Y	L	T	E	A	V	R	R	R	P	Y	S	V	I	L	L	D	E	V	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	L	D	D	G	R	L	T	D	G	Q	G	R	T	V	D	F	R	N	T	V	V	I	M	T	S	N	L
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.
Template Sequence		H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	L	T	E	K	V	R	R	K	P	Y	S	V	V	L	L	D	A	I	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	L	E	D	G	R	L	T	T	.	.	.	.	.	V	D	F	R	N	T	I	L	I	M	T	S	N	V
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S	S	S							G	G	G	S															S	B				.	.	.	.	.		B		T	T								S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.
Template SS confidence
		581	.																		.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.						.	.	.	.	.	630	.	.	.	.	.	.	.	.
		721	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	D	L	I	Q	E	R	F	G	E	L	D	Y	A	H	M	K	E	L	V	L	G	V	V	S	H	N	F	R	P	E	F	I	N	R	I	D	E	V	V	V	F	H	P	L	G	E	Q	H	I	A	S	I	A	Q	I	Q	L	K	R	L	Y	K	R	L	E	E	R	G	Y	E	I	H	I	S	D	E	A	L
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Sequence		G	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	D	K	V	M	G	E	L	K	R	A	F	R	P	E	F	I	N	R	I	D	E	I	I	V	F	H	E	K	.	.	K	H	L	T	E	I	V	S	L	M	S	D	Q	L	T	K	R	L	K	E	Q	D	L	S	I	E	L	T	D	A	A	K
Template Known Secondary structure		S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.													S						T	T	S	S									.	.																				T	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template SS confidence
		661	.	.														.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.			.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.
		801	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	L	S	E	N	G	Y	D	P	V	Y	G	A	R	P	L	K	R	A	I	Q	Q	Q	I	E	N	P	L	A	Q	Q	I	L	S	G	E	L	V	P	G	K	V	I	R	L	E	V	N	E	D	R	I	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	V	A	E	E	G	V	D	L	E	Y	G	A	R	P	L	R	R	A	I	Q	K	H	V	E	D	R	L	S	E	E	L	L	R	G	N	I	H	K	G	Q	H	I	V	L	D	V	E	D	G	E	F	V	V
Template Known Secondary structure						G	G	G			T	T	T	T	T	T	T									T										T	T		S		S	S	S							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		749	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.