Job Description P63284 Confidence 99.88% Date Thu Jan 5 12:08:03 GMT 2012 Rank 23 Aligned Residues 209 % Identity 21% Template c3eihB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas Resolution 3.25 Å

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		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.				.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		H	R	V	I	G	Q	N	E	A	V	D	A	V	S	N	A	I	.	.	.	R	R	S	R	A	G	L	A	D	P	N	R	P	I	G	S	F	L	F	L	G	P	T	G	V	G	K	T	E	L	C	K	A	L	A	N	F	M	F	D	S	D	E	A	M	V	R	I	D	M	S	E	F	M	E	K	H	S	V	S
Query Conservation																			.	.	.
Alig confidence																			.	.	.																																							.	.	.													.	.	.	.	.
Template Conservation																																																												.	.	.													.	.	.	.	.
Template Sequence		E	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	V	K	F	P	H	L	F	K	G	N	R	K	P	T	S	G	I	L	L	Y	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	.	N	S	T	F	F	S	V	S	S	S	D	L	.	.	.	.	.	V	S
Template Known Secondary structure		T	T	S		S													T						G	G	G			T	T												S	T	T	S												T	T	.	.	.	T												.	.	.	.	.	T	T
Template Predicted Secondary structure																																																												.	.	.													.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.						.	.
		645	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.												.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	V	G	A	P	P	G	Y	V	G	Y	E	E	G	G	Y	L	T	E	A	V	R	R	R	P	Y	S	V	I	L	L	D	E	V	E	K	A	.	.	.	.	.	.	.	.	.	.	.	H	P	D	V	F	N	I	L	L	Q	V	L	D	D	G	R	L	T	D	G	Q	G	R	T	V	D	F	R	N	T	V
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.																																																	.	.	.	.	.	.	.	.
Template Sequence		K	W	M	G	E	S	E	K	L	V	.	.	.	.	.	K	Q	L	F	A	M	A	R	E	N	K	P	S	I	I	F	I	D	Q	V	D	A	L	T	G	T	R	G	E	G	E	S	E	A	S	R	R	I	K	T	E	L	L	V	Q	M	N	G	.	.	.	.	.	.	.	.	V	G	N	D	S	Q	G	V	L
Template Known Secondary structure		T	S	S	S	S		T	T	T		.	.	.	.	.									T	T	S	S							S	G	G	G	G					S	S	S	S	S	S	S	S	S	T	T								T	T	S	.	.	.	.	.	.	.	.	T	T	T	T	S		S
Template Predicted Secondary structure												.	.	.	.	.																																																	.	.	.	.	.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.						.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.									.	.	.	.	.	.	.	270	.
		714	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	M	T	S	N	L	G	S	D	L	I	Q	E	R	F	G	E	L	D	Y	A	H	M	K	E	L	V	L	G	V	V	S	H	N	F	R	P	E	F	I	N	R	I	D	E	V	V	V	F	H	P	L	G	E	Q	H	I	A	S	I	A	Q	I	Q	L	K	R	L	Y	K	R	L	E	E	R	G	Y	E	I
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Sequence		V	L	G	A	T	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	W	Q	L	D	S	A	I	R	R	R	F	E	R	R	I	Y	I	P	L	P	D	L	A	A	R	T	T	M	F	E	I	N	V	.	.	.	.	.	.	.	.	.	G	D	T	P	C
Template Known Secondary structure							S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S																															.	.	.	.	.	.	.	.	.	T	T	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		272	.	.	.	.	.	.																										.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.										.	.	.	.	.
		794	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	S	D	E	A	L	K	L	L	S	E	N	G	Y	D	P	V	Y	G	A	R	P	L	K	R	A	I	Q	Q	Q	I	E	N	P	L	A	Q	Q	I
Query Conservation
Alig confidence															.	.
Template Conservation															.	.
Template Sequence		V	L	T	K	E	D	Y	R	T	L	G	A	M	.	.	T	E	G	Y	S	G	S	D	I	A	V	V	V	K	D	A	L	M	Q	P	I	R	K	I	Q
Template Known Secondary structure														T	.	.		T	T															T
Template Predicted Secondary structure															.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330			.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions