Job Description P63284 Confidence 99.89% Date Thu Jan 5 12:08:03 GMT 2012 Rank 22 Aligned Residues 227 % Identity 22% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		569	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	I	G	Q	N	E	A	V	D	A	V	S	N	A	I	R	R	S	R	A	G	L	A	D	P	N	R	P	I	G	S	F	L	F	L	G	P	T	G	V	G	K	T	E	L	C	K	A	L	A	N	F	M	F	D	S	D	E	A	M	V	R	I	D	M	S	E	F	M	E	K	H	S	V	S	R	L	V	G
Query Conservation
Alig confidence																										.	.	.	.	.	.	.																												.
Template Conservation																										.	.	.	.	.	.	.																												.
Template Sequence		E	F	V	G	E	H	P	K	I	L	E	I	K	R	L	I	P	K	I	A	K	S	K	A	.	.	.	.	.	.	.	P	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	G	R	K	G	.	A	F	V	D	L	N	C	A	S	I	P	Q	E	L	A	E	S	E	L	F	G
Template Known Secondary structure							S															T	S		S	.	.	.	.	.	.	.								T	T	S	S																S	.							S	S	S	S		T	T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.																												.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.								.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		649	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	P	G	Y	V	G	Y	E	E	G	G	Y	L	T	E	A	V	R	R	R	P	Y	S	V	I	L	L	D	E	V	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	L	D	D	G	R	L	T	D	G	Q	G	R	T	V	D	F	R	N	T	V	V	I	M	T	S	N	L	G	S	D	L	I	Q	E	R
Query Conservation
Alig confidence						.																																																																											.
Template Conservation						.																																																																											.
Template Sequence		H	E	K	G	.	A	F	T	G	A	L	T	R	K	K	G	K	L	E	L	A	D	Q	G	T	L	F	L	D	E	V	G	E	L	D	Q	R	V	Q	A	K	L	L	R	V	L	E	T	G	S	F	T	R	L	G	G	N	Q	K	I	E	V	D	I	R	V	I	S	A	T	N	K	N	L	E	E	E	I	K	.
Template Known Secondary structure				S		.	S	S	S	S												T	T	T	S						T	G	G	G	S															S					B	T																S	S								.
Template Predicted Secondary structure						.																																																																											.
Template SS confidence
		203	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		729	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760		.	.	.	.	.	.	.	.			.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.
Predicted Secondary structure																																		.									.	.
Query SS confidence																																		.									.	.
Query Sequence		F	G	E	L	D	Y	A	H	M	K	E	L	V	L	G	V	V	S	H	N	F	R	P	E	F	I	N	R	I	D	E	V	.	V	V	F	H	P	L	G	E	.	.	Q	H	I	A	S	I	A	Q	I	Q	L	K	R	L	Y	K	R	L	E	E	R	G	Y	E	I	H	I	S	D	E	A	L	K	L	L	S	E
Query Conservation																																		.									.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.									.	.																									.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	N	F	R	E	D	L	Y	Y	R	L	S	V	F	Q	I	Y	L	P	P	L	R	E	R	G	K	D	V	I	L	L	A	E	Y	F	L	K	K	F	A	K	E	Y	K	K	N	C	F	E	.	.	L	S	E	E	T	K	E	Y	L	X	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S									T	S								G	G	G	S	T	T																	T	T						.	.	B										T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.
Template SS confidence
																			281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330			.	.	.	.	.	.	.	.	.	340	.
		806	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	Y	D	P	V	Y	G	A	R	P	L	K	R	A	I	Q	Q	Q	I	E
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	Q	E	W	K	G	N	V	R	E	L	K	N	L	I	E	R	A	V	I
Template Known Secondary structure		.	.				T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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