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Job DescriptionP63284
Confidence99.17%DateThu Jan 5 12:08:03 GMT 2012
Rank101Aligned Residues130
% Identity12%Templatec3co5B_
PDB info PDB header:transcription regulatorChain: B: PDB Molecule:putative two-component system transcriptional response PDBTitle: crystal structure of sigma-54 interaction domain of putative2 transcriptional response regulator from neisseria gonorrhoeae
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   581........590.........600.........610.........620.........630.........640.........650.........660
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Query Sequence  SNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGG
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Template Sequence  SAAIQEXNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDX. . . . . . . . . . . . . . . . . . . . . . .
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   139140.........150.........160.........170.........180.........190.....
 
   661........670.........680.........690.........700.........710.........720.........730.........740
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Query Sequence  YLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKEL
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Template Sequence  . PXELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE. . . . . . . . . . RCRVRVIASCSYAAGSDS. . . . . . . . . . . . . .
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   196...200.........210.........220.........230.. .......240.........250
 
   741........750.........760 ......
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Query Sequence  VLGVVSHNFRPEFINRIDEV. VVFHPL
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Template Sequence  . . . . . . . . CEEKLAGLFSESVVRIPPL
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   253......260.........270.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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