Job Description P63284 Confidence 99.17% Date Thu Jan 5 12:08:03 GMT 2012 Rank 101 Aligned Residues 130 % Identity 12% Template c3co5B_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative two-component system transcriptional response PDBTitle: crystal structure of sigma-54 interaction domain of putative2 transcriptional response regulator from neisseria gonorrhoeae Resolution 2.40 Å

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		581	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	A	I	R	R	S	R	A	G	L	A	D	P	N	R	P	I	G	S	F	L	F	L	G	P	T	G	V	G	K	T	E	L	C	K	A	L	A	N	F	M	F	D	S	D	E	A	M	V	R	I	D	M	S	E	F	M	E	K	H	S	V	S	R	L	V	G	A	P	P	G	Y	V	G	Y	E	E	G	G
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	A	I	Q	E	X	N	R	E	V	E	A	A	A	K	R	T	S	P	V	F	L	T	G	E	A	G	S	P	F	E	T	V	A	R	Y	F	H	K	N	G	T	P	W	V	S	P	A	R	V	E	Y	L	I	D	X	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T		S	S								T	T									T	T			T	T	S						S	S	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		661	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	T	E	A	V	R	R	R	P	Y	S	V	I	L	L	D	E	V	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	L	D	D	G	R	L	T	D	G	Q	G	R	T	V	D	F	R	N	T	V	V	I	M	T	S	N	L	G	S	D	L	I	Q	E	R	F	G	E	L	D	Y	A	H	M	K	E	L
Query Conservation
Alig confidence		.																																						.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																						.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	P	X	E	L	L	Q	K	A	E	G	G	V	L	Y	V	G	D	I	A	Q	Y	S	R	N	I	Q	T	G	I	T	F	I	I	G	K	A	E	.	.	.	.	.	.	.	.	.	.	R	C	R	V	R	V	I	A	S	C	S	Y	A	A	G	S	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.								T	T	T	S								T	T																	T	.	.	.	.	.	.	.	.	.	.	T	T	T											T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.																																						.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.											.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		741	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760		.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		V	L	G	V	V	S	H	N	F	R	P	E	F	I	N	R	I	D	E	V	.	V	V	F	H	P	L
Query Conservation																						.
Alig confidence		.	.	.	.	.	.	.	.													.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	C	E	E	K	L	A	G	L	F	S	E	S	V	V	R	I	P	P	L
Template Known Secondary structure		.	.	.	.	.	.	.	.									S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions