Job Description P63284 Confidence 99.88% Date Thu Jan 5 12:08:03 GMT 2012 Rank 25 Aligned Residues 205 % Identity 22% Template c2zamA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form Resolution 3.50 Å

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		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.				.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		H	R	V	I	G	Q	N	E	A	V	D	A	V	S	N	A	I	.	.	.	R	R	S	R	A	G	L	A	D	P	N	R	P	I	G	S	F	L	F	L	G	P	T	G	V	G	K	T	E	L	C	K	A	L	A	N	F	M	F	D	S	D	E	A	M	V	R	I	D	M	S	E	F	M	E	K	H	S	V	S
Query Conservation																			.	.	.
Alig confidence																			.	.	.																																							.	.																	.	.	.	.
Template Conservation																																																												.	.																	.	.	.	.
Template Sequence		S	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	N	N	S	T	F	F	S	I	S	S	S	D	L	V	S	S	.	.	.	.
Template Known Secondary structure		G	G	S		S												T							G	G	G	S		S	S					S							S	T	T	S													T	.	.	T	T									S	T	T	T			.	.	.	.
Template Predicted Secondary structure																																																												.	.																	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		645	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.			.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		R	L	V	G	A	P	P	G	Y	V	G	Y	E	E	G	G	Y	L	T	E	A	V	R	R	R	P	Y	S	V	I	L	L	D	E	V	E	K	.	.	A	H	P	D	V	F	N	I	L	L	Q	V	L	D	D	G	R	L	T	D	G	Q	G	R	T	V	D	F	R	N	T	V	V	I	M	T	S	N	L	G	S
Query Conservation																																							.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																											.	.																.	.	.	.	.	.	.	.																	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.																	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	E	K	L	V	K	N	L	F	Q	L	A	R	E	N	K	P	S	I	I	F	I	D	E	I	D	S	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	.	.	.	.	.	.	.	.	V	G	V	D	N	D	G	I	L	V	L	G	A	T	N	I	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.		T												T		S							S																				T	.	.	.	.	.	.	.	.	S	S	S			T	T								S		.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.																	.	.
Template SS confidence
													213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.									.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		723	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	I	Q	E	R	F	G	E	L	D	Y	A	H	M	K	E	L	V	L	G	V	V	S	H	N	F	R	P	E	F	I	N	R	I	D	E	V	V	V	F	H	P	L	G	E	Q	H	I	A	S	I	A	Q	I	Q	L	K	R	L	Y	K	R	L	E	E	R	G	Y	E	I	H	I	S	D	E	A	L	K	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	W	V	L	D	S	A	I	R	R	R	F	E	K	R	I	Y	I	P	L	P	E	A	H	A	R	A	A	M	F	R	L	H	L	.	.	.	.	.	.	.	.	.	G	S	T	Q	N	S	L	T	E	A	D	F	Q	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S									S										S												.	.	.	.	.	.	.	.	.	T	T			B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template SS confidence
																									281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.										.	.	.	.	.	320	.	.	.	.	.	.	.	.
		803	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	E	N	G	Y	D	P	V	Y	G	A	R	P	L	K	R	A	I	Q	Q	Q	I	E	N	P	L	A	Q	Q	I
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		L	G	R	K	.	.	T	D	G	Y	S	G	A	D	I	S	I	I	V	R	D	A	L	M	Q	P	V	R	K	V	Q
Template Known Secondary structure					S	.	.			S
Template Predicted Secondary structure						.	.
Template SS confidence
		329	330	.	.			.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions