Job Description P63284 Confidence 99.43% Date Thu Jan 5 12:08:03 GMT 2012 Rank 91 Aligned Residues 208 % Identity 22% Template c2z4rB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa Resolution 3.05 Å

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		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	R	R	S	R	A	G	L	A	D	P	N	R	P	I	G	S	F	L	F	L	G	P	T	G	V	G	K	T	E	L	C	K	A	L	A	N	F	M	F	D	S	D	E	A	M	V	R	I	D	M	S	E	F	M	E	K	H	S	V	S	R	L	V	G	A	P	P	G	Y	V	G	Y	E	E	G	G	Y	L
Query Conservation
Alig confidence																		.																								.	.	.																										.	.	.	.	.
Template Conservation																		.																								.	.	.																										.	.	.	.	.
Template Sequence		A	Y	H	A	A	L	E	V	A	K	H	P	G	R	Y	N	.	P	L	F	I	Y	G	G	V	G	L	G	K	T	H	L	L	Q	S	I	G	N	Y	V	.	.	.	V	Q	N	E	P	D	L	R	V	M	Y	I	T	S	E	K	F	L	N	D	L	V	D	S	M	.	.	.	.	.	K	E	G	K	L	N	E
Template Known Secondary structure												S	T	T	T	S		.							S	S	S	S	S													.	.	.				S	S	S	S																			.	.	.	.	.		T	S
Template Predicted Secondary structure																		.																								.	.	.																										.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.						180	.	.	.	.	.	.
		663	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	A	V	R	R	R	P	Y	S	V	I	L	L	D	E	V	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	L	D	D	G	R	L	T	D	G	Q	G	R	T	V	D	F	R	N	T	V	V	I	M	T	S	N	L	G	S	D	L	I	Q	E	R	F	G	E	L	D	Y	A	H	M	K	E	L	V	L
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	R	E	K	Y	R	K	K	V	D	I	L	L	I	D	D	V	Q	F	L	I	G	K	T	G	V	Q	T	E	L	F	H	T	F	N	E	L	H	.	.	.	.	.	.	.	D	S	G	K	Q	I	V	I	C	S	D	R	E	P	Q	K	L	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T	T		S							G	G	G	G	T	T																	.	.	.	.	.	.	.	T	T	T								S	S		T	T	T		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.								.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		743	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.			760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		G	V	V	S	H	N	F	R	P	E	F	I	N	R	I	D	E	.	.	V	V	V	F	H	P	L	G	E	Q	H	I	A	S	I	A	Q	I	Q	L	K	R	L	Y	K	R	L	E	E	R	G	Y	E	I	H	I	S	D	E	A	L	K	L	L	S	E	N	G	Y	D	P	V	Y	G	A	R	P	L	K	R	A
Query Conservation																			.	.
Alig confidence		.	.	.	.	.	.												.	.																									.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation		.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		.	.	.	.	.	.	F	Q	D	R	L	V	S	R	F	Q	M	G	L	V	A	K	L	E	P	P	D	E	E	T	R	K	S	I	A	R	K	M	L	E	I	E	H	.	.	.	.	.	.	.	.	.	G	E	L	P	E	E	V	L	N	F	V	A	E	N	.	.	.	V	D	D	N	L	R	R	L	R	G	A
Template Known Secondary structure		.	.	.	.	.	.											S	S																									T	.	.	.	.	.	.	.	.	.					T	T									.	.	.			S
Template Predicted Secondary structure		.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
								244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280										.	.	.	.	.	.	.	.	.	290	.	.	.	.				.	.	.	.	.	300	.	.	.	.	.
		821	.	.	.	.	.	.	.	.	830											.	.	.	.	.	.	.	.	.	840
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.
Query Sequence		I	Q	Q	Q	I	E	N	P	L	A	.	.	.	.	.	.	.	.	.	.	Q	Q	I	L	S	G	E	L	V	P
Query Conservation												.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	K	L	L	V	Y	K	E	T	T	G	K	E	V	D	L	K	E	A	I	L	L	L	K	D	F	I	K	P
Template Known Secondary structure												S	S	S											T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions