Job Description P63284 Confidence 96.74% Date Thu Jan 5 12:08:03 GMT 2012 Rank 284 Aligned Residues 173 % Identity 12% Template c2vbcA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:dengue 4 ns3 full-length protein; PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus Resolution 3.15 Å

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		596	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.		.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.													.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.			.	.	.	.	.	.	.	660
Predicted Secondary structure																				.																					.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query SS confidence																				.																					.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query Sequence		R	P	I	G	S	F	L	F	L	G	P	T	G	V	G	K	T	E	.	L	C	K	A	L	A	N	F	M	F	D	S	D	E	A	M	V	R	I	D	.	.	.	.	.	.	.	.	.	.	.	.	M	S	E	F	M	E	K	H	S	V	S	R	L	V	G	A	P	P	G	.	.	Y	V	G	Y	E	E	G	G
Query Conservation																				.																					.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Alig confidence																				.																					.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence		R	K	K	R	L	T	I	M	D	L	H	P	G	A	G	K	T	K	R	I	L	P	S	I	V	R	E	A	L	K	R	R	L	R	T	L	I	L	A	P	T	R	V	V	A	A	E	M	E	E	A	L	R	G	L	P	I	R	Y	Q	T	P	A	V	K	S	D	H	T	G	R	E	I	V	D	L	M	C	H	A
Template Known Secondary structure		S	T	T									T	T	T			T	T	T												T	T								S	S											T	T	T	S							T	T		S						S	S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		661	.	.	.	.	.	.	.	.	670	.					.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		Y	L	T	E	A	V	R	R	R	P	Y	.	.	.	.	S	V	I	L	L	D	E	V	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	L	D	D	G	R	L	T	D	G	Q	G	R	T	V	D	F	R	N	T	V	V	I	M	T	S	N	L	G	S	D	L	I	Q	E	R	F	G	E	L	D	Y	A	H
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.																																	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.
Template Sequence		T	F	T	T	R	L	L	S	S	T	R	V	P	N	Y	N	L	I	V	M	D	E	A	H	F	T	D	P	C	S	V	A	A	R	G	Y	I	S	T	R	V	E	M	G	E	A	A	.	.	.	.	.	.	.	.	.	A	I	F	M	T	A	T	P	P	G	S	T	D	P	F	P	Q	S	N	S	P	I	E	D
Template Known Secondary structure											S						S						S	T	T			S																	T	S			.	.	.	.	.	.	.	.	.						S	S		T	T				S	S				S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310										.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		737	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	E	L	V	L	G	V	V	S	H	N	F	R	P	E	F	I	N	R	I	D	E	V	V	V	F	H	P	L	G	E	Q	H	I	A	S	I	A	Q	I	Q
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		I	E	R	E	I	P	E	R	S	W	N	T	G	F	D	W	I	T	D	Y	Q	G	K	T	V	W	F	V	P	.	S	I	K	A	G	N	D	I	A	N	C	L
Template Known Secondary structure								S	S				S	S									S							S	.	S
Template Predicted Secondary structure																															.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.		.	.	.	.	.	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions