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Job DescriptionP63284
Confidence97.03%DateThu Jan 5 12:08:03 GMT 2012
Rank251Aligned Residues127
% Identity23%Templatec2hydB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   596...600.........610.........620.........630.........640....
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Query Sequence  RPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  EKGETVAFVGMSGGGKSTLINLIPR. FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT
Template Known Secondary structure 
TT

STTSSTTTTT.SS

STTGGGS
T
SS



SSBGGG
SS

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   365....370.........380......... 390.........400.........410.........420.........430.........440...
 
   645....650.. .......660.........670.........680. ........690......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . RLVGAPPG. . YVGYEEGGYLTEAVRRRPYSVILLDEVEK. AHPDVFNILLQVLDD
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Template Sequence  DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP. ILILDEATSALDLESESIIQEALDV
Template Known Secondary structure  TT
TSTTGGG
B

GGGTTS


S.STTTT

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   444.....450.........460.........470.........480.........490....... ..500.........510.........520..
 
   697..700.........710.........720.........730.........740.........750.........760.....
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Query Sequence  GRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHP
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Template Sequence  . . . . . . . . . . . LSKDRTTLIVAH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RLSTITHADKIVVIEN
Template Known Secondary structure  ...........TTTS
S..............................SGGGTTT
ST
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   523......530.... .....540.........550
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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