Job Description P63284 Confidence 97.31% Date Thu Jan 5 12:08:03 GMT 2012 Rank 205 Aligned Residues 150 % Identity 10% Template c1yj5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme Resolution 2.80 Å

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		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	R	P	I	G	S	F	L	F	L	G	P	T	G	V	G	K	T	E	L	C	K	A	L	A	N	F	M	F	D	S	D	E	A	M	V	R	I	D	M	S	E	F	M	E	K	H	S	V	S	R	L	V	G	A	P	P	G	Y	V	G	Y	E	E	G	G	Y	L	T	E	A	V	R	R	R	P	Y	S	V
Query Conservation
Alig confidence																													.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																													.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		L	S	P	N	P	E	V	V	V	A	V	G	F	P	G	A	G	K	S	T	F	I	Q	E	H	L	V	.	.	.	.	.	S	A	G	Y	V	H	V	N	R	D	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	W	Q	R	C	V	S	S	C	Q	A	A	L	R	Q	G	K	R	.	.
Template Known Secondary structure		S		S	S										T	T	S	S									T	G	.	.	.	.	.	G	G	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S														T	T			.	.
Template Predicted Secondary structure																													.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.						.	.	.	390	.	.	.	.	.	.	.	.																.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		674	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.				.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.																													.
Query SS confidence																																																		.	.	.																													.
Query Sequence		I	L	L	D	E	V	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	L	D	D	G	R	L	T	D	G	Q	G	R	T	V	D	F	R	N	T	V	V	I	M	T	S	N	L	G	.	.	.	S	D	L	I	Q	E	R	F	G	E	L	D	Y	A	H	M	K	E	L	V	L	G	V	V	S	H	N	F	.
Query Conservation																																																		.	.	.																													.
Alig confidence								.															.	.	.	.	.	.	.	.	.	.																		.	.	.																													.
Template Conservation								.															.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	I	D	N	T	.	N	P	D	V	P	S	R	A	R	Y	I	Q	C	A	.	.	.	.	.	.	.	.	.	.	K	D	A	G	V	P	C	R	C	F	N	F	C	A	T	I	E	Q	A	R	H	N	N	R	F	R	E	X	T	D	P	S	H	A	P	V	S	D	X	V	X	F	S	Y	R	K	Q	F	E
Template Known Secondary structure						S		.			S												.	.	.	.	.	.	.	.	.	.				T																											T	T
Template Predicted Secondary structure								.															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		418	.	420	.	.	.		.	.	.	.	.	.	430	.	.	.	.	.	.	.											.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		750	.	.	.	.	.	.	.	.	.	760	.	.					.	.	.	.	.	.	.	770	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		R	P	E	F	I	N	R	I	D	E	V	V	V	.	.	.	.	F	H	P	L	G	E	Q	H	I	A	S	I	A	Q
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.
Template Conservation
Template Sequence		P	P	T	L	A	E	G	F	L	E	I	L	E	I	P	F	R	L	Q	E	H	L	D	P	A	L	Q	R	L	Y	R
Template Known Secondary structure					G	G	G	S		S											T	T										T
Template Predicted Secondary structure
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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