Job Description P63284 Confidence 99.66% Date Thu Jan 5 12:08:03 GMT 2012 Rank 71 Aligned Residues 191 % Identity 17% Template c1sxjE_ PDB info PDB header:replication Chain: E: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	V	I	G	Q	N	E	A	V	D	A	V	S	N	A	I	R	R	S	R	A	G	L	A	D	P	N	R	P	I	G	S	F	L	F	L	G	P	T	G	V	G	K	T	E	L	C	K	A	L	A	N	F	M	F	D	S	D	E	A	M	V	R	I	D	M	S	E	F	M	E	K	H	S	V	S	R	L	V
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.																														.	.	.															.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.																														.	.	.															.	.	.	.	.	.	.
Template Sequence		N	A	L	S	H	N	E	E	L	T	N	F	L	K	S	L	S	D	.	.	.	.	.	.	.	.	Q	P	R	D	L	P	H	L	L	L	Y	G	P	N	G	T	G	K	K	T	R	C	M	A	L	L	E	S	I	.	.	.	F	G	P	G	V	Y	R	N	V	V	S	S	P	Y	.	.	.	.	.	.	.	H
Template Known Secondary structure		G	G			S										T	T	T	T	.	.	.	.	.	.	.	.		T	T										S	T	T	S	S							T						.	.	.	S		T	T									S	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.																														.	.	.															.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.									.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.								.
		648	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.			.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		G	A	P	P	G	Y	V	G	Y	E	E	G	G	Y	L	T	E	A	V	R	.	.	R	R	P	Y	S	V	I	L	L	D	E	V	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	L	D	D	G	R	L	T	D	G	Q	G	R	T	V	D	F	R	N	T	V	V	I	M	T	S	N	L	G	S	D	L	I
Query Conservation																						.	.
Alig confidence																						.	.																														.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template Sequence		L	E	I	T	P	S	N	D	R	I	V	I	Q	E	L	L	K	E	V	A	Q	M	E	Q	R	Y	K	C	V	I	I	N	E	A	N	S	L	T	K	D	A	Q	A	A	L	R	R	T	M	E	K	.	.	.	.	.	.	.	.	.	.	.	Y	S	K	N	I	R	L	I	M	V	C	D	S	.	.	.	.	.
Template Known Secondary structure																					T	T	T	T											T	T	S	S															.	.	.	.	.	.	.	.	.	.	.	S	T	T	T								S		.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.												.	.	.	.	.	150	.	.	.	.	.	.	.
		726	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	R	F	G	E	L	D	Y	A	H	M	K	E	L	V	L	G	V	V	S	H	N	F	R	P	E	F	I	N	R	I	D	E	V	V	V	F	H	P	L	G	E	Q	H	I	A	S	I	A	Q	I	Q	L	K	R	L	Y	K	R	L	E	E	R	G	Y	E	I	H	I	S	D	E	A	L	K	L	L	S	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																														.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																														.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	S	P	I	I	A	P	I	K	S	Q	C	.	L	L	I	R	C	P	A	P	S	D	S	E	I	S	T	I	L	S	D	V	V	T	N	E	R	I	Q	L	E	.	.	.	.	.	.	.	.	T	K	D	I	L	K	R	I	A	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S	S						T	T	S	.																									T					.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																														.	.	.	.	.	.	.	.
Template SS confidence
																						174	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.									.	.	.	.	.	220	.	.	.	.
		806	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	Y	D	P	V	Y	G	A	R	P	L	K	R	A	I	Q	Q	Q
Query Conservation
Alig confidence					.	.	.
Template Conservation					.	.	.
Template Sequence		A	S	N	.	.	.	G	N	L	R	V	S	L	L	M	L	E	S	M
Template Known Secondary structure				T	.	.	.	T										T
Template Predicted Secondary structure					.	.	.
Template SS confidence
		225	.	.				.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions