Job Description P63284 Confidence 99.63% Date Thu Jan 5 12:08:03 GMT 2012 Rank 72 Aligned Residues 200 % Identity 17% Template c1sxjA_ PDB info PDB header:replication Chain: A: PDB Molecule:activator 1 95 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.									.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.
Query Sequence		H	R	V	I	G	Q	N	E	A	V	D	A	V	S	N	A	I	R	R	.	.	.	.	.	.	.	.	S	R	A	G	L	A	D	P	N	R	P	I	G	S	F	L	F	L	G	P	T	G	V	G	K	T	E	L	C	K	A	L	A	N	F	M	F	D	S	D	E	A	M	V	R	I	D	M	S	E	F	M	E
Query Conservation																					.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.																																					.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		Q	Q	V	C	G	N	K	G	S	V	M	K	L	K	N	W	L	A	N	W	E	N	S	K	K	N	S	F	K	H	A	G	K	D	G	S	G	V	F	R	A	A	M	L	Y	G	P	P	G	I	G	K	T	T	A	A	H	L	V	A	Q	E	L	.	.	.	G	Y	D	I	L	E	Q	N	A	S	D	V	R	S
Template Known Secondary structure		G	G			S														T							T	T	T					T	T	S	T	T	S		S							S	T	T	S	S												T	.	.	.	T								T	T	S
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370				.	.	.	.	.	.	.	.	.	380	.	.	.	.
		640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.				.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.
Query SS confidence																																																.	.	.
Query Sequence		K	H	S	V	S	R	L	V	G	A	P	P	G	Y	V	G	Y	E	E	G	G	Y	L	T	E	A	V	R	R	R	P	Y	S	V	I	L	L	D	E	V	E	K	A	H	P	D	.	.	.	V	F	N	I	L	L	Q	V	L	D	D	G	R	L	T	D	G	Q	G	R	T	V	D	F	R	N	T	V	V	I	M
Query Conservation																																																.	.	.
Alig confidence																				.	.																											.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.																																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	T	L	L	N	A	G	V	K	N	A	L	D	N	M	S	V	V	.	.	G	Y	F	K	H	Q	N	L	N	G	K	H	F	V	I	I	M	D	E	V	D	G	M	S	G	G	D	R	G	G	V	G	Q	L	A	Q	F	C	R	K	T	S	T	P	.	.	.	.	.	.	.	.	.	.	.	L	I	L	I	C
Template Known Secondary structure								T	G	G	G	G	T	T				S	T	.	.	T	T	T	T				S	S	T	T	S							S	G	G	G			T	T	S	T	T													S	S		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.																																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.			.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.												.	.	.	450	.
		717	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	N	L	G	S	D	L	I	Q	E	R	F	G	E	L	D	Y	A	H	M	K	E	L	V	L	G	V	V	S	H	N	F	R	P	E	F	I	N	R	I	D	E	V	V	V	F	H	P	L	G	E	Q	H	I	A	S	I	A	Q	I	Q	L	K	R	L	Y	K	R	L	E	E	R	G	Y	E	I	H	I	S
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.																										.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.																										.	.	.	.	.	.	.	.	.
Template Sequence		N	E	R	N	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	M	R	P	F	D	R	V	C	.	L	D	I	Q	F	R	R	P	D	A	N	S	I	K	S	R	L	M	T	I	A	I	R	E	K	.	.	.	.	.	.	.	.	.	F	K	L	D
Template Known Secondary structure		S		T	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	G	G	G	T	T	T	S	.																									T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.																										.	.	.	.	.	.	.	.	.
Template SS confidence
		456	.	.	.	460	.																											.	.	.	.	.	.	.	.	470		.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.										.	.	.	.
		797	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	A	L	K	L	L	S	E	N	G	Y	D	P	V	Y	G	A	R	P	L	K	R	A	I	Q
Query Conservation
Alig confidence													.	.	.
Template Conservation													.	.	.
Template Sequence		P	N	V	I	D	R	L	I	Q	T	T	.	.	.	R	G	D	I	R	Q	V	I	N	L	L	S
Template Known Secondary structure		T	T									T	.	.	.	T	T										T
Template Predicted Secondary structure													.	.	.
Template SS confidence
		500	.	.	.	.	.	.	.	.	.	510				.	.	.	.	.	.	.	.	.	520	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions