Job Description P63284 Confidence 98.02% Date Thu Jan 5 12:08:03 GMT 2012 Rank 131 Aligned Residues 156 % Identity 12% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		Q	N	E	A	V	D	A	V	S	N	A	I	R	R	S	R	A	G	L	A	D	P	N	R	P	I	G	S	F	L	F	L	G	P	T	G	V	G	K	T	E	L	C	K	A	L	A	N	F	M	F	D	S	D	E	A	M	V	R	I	D	M	S	E	F	M	E	K	H	S	V	S	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																																																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	I	V	Y	D	E	L	S	K	L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I
Template Known Secondary structure													T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S											T
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
				645	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	L	V	G	A	P	P	G	Y	V	G	Y	E	E	G	G	Y	L	T	E	A	V	R	R	R	P	Y	S	V	I	L	L	D	E	V	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	L	D	D	G	R	L	T	D	G	Q	G	R	T	V	D	F	R	N	T	V	V	I	M	T	S	N	L	G	S
Query Conservation		.	.
Alig confidence		.	.																																																			.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.
Template Sequence		G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	.	.	.	.	.	.	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q
Template Known Secondary structure		T							S	S				T	T													T	T		S									S			S	S	T									.	.	.	.	.	.										S								T	T	T	G	G
Template Predicted Secondary structure																																																						.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.							.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		723	.	.	.	.	.	.	730	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	I	Q	E	R	F	G	E	L	D	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	Y	D	L	A	S	R	F	H	Q	A
Template Known Secondary structure		G	G									T	T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions