Return to main results Retrieve Phyre Job Id

Job DescriptionP63284
Confidence99.61%DateThu Jan 5 12:08:03 GMT 2012
Rank79Aligned Residues162
% Identity16%Templatec1jr3E_
PDB info PDB header:transferaseChain: E: PDB Molecule:dna polymerase iii, delta' subunit; PDBTitle: crystal structure of the processivity clamp loader gamma2 complex of e. coli dna polymerase iii
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   570.........580.........590.........600.........610.........620......... 630.........
Predicted Secondary structure 





















..........


Query SS confidence 



























































. . . . . . . . . .









Query Sequence  VIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAM. . . . . . . . . . VRIDMSEFME
Query Conservation     
  
   
                
    

 

 
 


 

 


         
..........


  

   
Alig confidence 












........






































..........









Template Conservation   

       
  ........ 
    
 

 

 
  
 

   
  

  
 
           
  
         
Template Sequence  YPWLRPDFEKLVA. . . . . . . . SYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD
Template Known Secondary structure 
TTT........TTTTS


S

TTSST
SS

SSS

S
STS

SS
Template Predicted Secondary structure 



........






























Template SS confidence 















































































   4.....10...... ...20.........30.........40.........50.........60.........70.....
 
   640.........650.........660.........670.. .......680.........690.........700.........710.....
Predicted Secondary structure 















....















Query SS confidence 
































. . . .










































Query Sequence  KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYS. . . . VILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVI
Query Conservation          
   
         
          ....

 



      
   
   
  
   
  
        


Alig confidence 










..



















....























...........







Template Conservation     
       .. 
 

 

 
             

 

  

     
 




 


...........
      
Template Sequence  YYTLAPEKGKN. . TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE. . . . . . . . . . . PPAETWFF
Template Known Secondary structure 


TTSS..SB
SS

TTSS
S
GGGB
S...........

TT
Template Predicted Secondary structure 





..

















...........



Template SS confidence 















































































   76...80...... ...90.........100.........110.........120.........130.... .....140..
 
   716...720.........730.........740.........750.........760.........770........
Predicted Secondary structure 
















Query SS confidence 






























































Query Sequence  MTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQ
Query Conservation   


                                    
    
 
  
       
    
Alig confidence 




.........................











.



















Template Conservation 
 
  .........................   

 

 

 .  
             
 
 
Template Sequence  LATRE. . . . . . . . . . . . . . . . . . . . . . . . . PERLLATLRSRC. RLHYLAPPPEQYAVTWLSRE
Template Known Secondary structure  S
.........................STTS
TTTTTTS.




Template Predicted Secondary structure 

.........................




.




Template SS confidence 






























































   143.... ..150......... 160.........170.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions