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Job DescriptionP63284
Confidence95.96%DateThu Jan 5 12:08:03 GMT 2012
Rank353Aligned Residues98
% Identity22%Templatec1a1vA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  RPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFME. . KHSVSRLVGAPPG. YVGY. . . . . . . . . . . . EEGG
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Template Sequence  QSFQVAHLHAPTGSGKS. . TKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITTGSPITYSTYGK
Template Known Secondary structure  SS


TTS
TT..TTTT

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   195....200.........210. ........220.........230.........240.........250.........260.........270..
 
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Query Sequence  YLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLD
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Template Sequence  FLADGGSGGAYDIIICDECHSTDATSILGIGTVLD
Template Known Secondary structure  TT





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   273......280.........290.........300.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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