Job Description P0ABB4 Confidence 100.00% Date Thu Jan 5 11:15:05 GMT 2012 Rank 23 Aligned Residues 340 % Identity 19% Template c3l0oB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:transcription termination factor rho; PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima Resolution 2.35 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		L	E	V	Q	Q	Q	L	G	G	G	I	V	R	T	I	A	M	G	S	S	D	G	L	R	R	G	L	D	V	K	D	L	E	.	.	.	H	P	I	E	V	P	V	G	K	A	T	L	G	R	I	M	N	V	L	G	E	P	V	D	M	K	G	E	I	G	E	E	E	R	W	A	I	H	R	A	A	P	S	Y
Query Conservation																																			.	.	.
Alig confidence																																			.	.	.																																											.	.
Template Conservation																																																																																.	.
Template Sequence		G	E	G	V	L	E	I	H	P	E	G	F	G	F	L	R	R	I	E	D	N	L	L	P	S	N	D	D	I	Y	I	S	P	S	Q	I	R	K	F	N	L	N	T	G	D	I	I	S	G	V	I	A	M	I	K	I	E	A	I	N	Y	R	P	R	V	N	F	D	N	L	T	P	D	Y	P	R	E	R	.	.
Template Known Secondary structure										S	S	S							G	G	G	T	T				T	T						S	S	S	S	S	S	S				T	T										S			S			S	S						T	T	T	S							S	B	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		E	E	L	S	N	S	Q	E	L	L	E	T	G	I	K	V	I	D	L	M	C	P	F	A	K	G	G	K	V	G	L	F	G	G	A	G	V	G	K	T	V	N	M	M	E	L	I	R	N	I	A	I	E	H	S	G	Y	S	.	V	F	A	G	V	G	E	R	T	R	E	G	N	D	F	Y	H	E	M	T	D
Query Conservation																																																												.
Alig confidence		.	.																																																									.																				.	.
Template Conservation		.	.																																																																													.	.
Template Sequence		.	.	F	I	L	E	T	D	P	K	I	Y	S	T	R	L	I	D	L	F	A	P	I	G	K	G	Q	R	G	M	I	V	A	P	P	K	A	G	K	T	T	I	L	K	E	I	A	N	G	I	A	E	N	H	P	D	T	I	R	I	I	L	L	I	D	E	R	P	E	E	V	T	D	I	R	E	S	T	.	.
Template Known Secondary structure		.	.						S	T	T											S			B	T	T									T	T	S	S																	T	T	S																			T	T	S	.	.
Template Predicted Secondary structure		.	.																																																																													.	.
Template SS confidence
				152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	V	I	D	K	V	S	L	V	Y	G	Q	M	N	E	P	P	G	N	R	L	R	V	A	L	T	G	L	T	M	A	E	K	F	R	D	E	G	R	D	V	L	L	F	V	D	N	I	Y	R	Y	T	L	A	G	T	E	V	S	A	L	L	G	R	M	P	S	A	V	G	Y	Q	P	T	L	A	E	E	M
Query Conservation
Alig confidence		.	.	.	.	.																																																																.
Template Conservation		.	.	.	.	.																																																																.
Template Sequence		.	.	.	.	.	N	A	I	V	I	A	A	P	F	D	M	P	P	D	K	Q	V	K	V	A	E	L	T	L	E	M	A	K	R	L	V	E	F	N	Y	D	V	V	I	L	L	D	S	L	T	R	L	A	R	V	Y	N	I	V	V	P	P	S	G	K	L	L	T	.	G	G	V	D	P	A	A	L	Y	K	P
Template Known Secondary structure		.	.	.	.	.		S							T	T	S																						T	T																					S		S		S	S			S	.	S	S			T	T	T	T	S	T
Template Predicted Secondary structure		.	.	.	.	.																																																																.
Template SS confidence
							228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.
		277	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure														.													.
Query SS confidence														.													.
Query Sequence		G	V	L	Q	E	R	I	T	S	T	K	T	.	G	S	I	T	S	V	Q	A	V	Y	V	P	.	A	D	D	L	T	D	P	S	P	A	T	T	F	A	H	L	D	A	T	V	V	L	S	R	Q	I	A	S	L	G	I	Y	P	A	V	D	P	L	D	S	T	S	R	Q	L	D	P	L	V	V	G	Q	E	H
Query Conservation														.													.
Alig confidence														.													.																																															.
Template Conservation																																																																										.
Template Sequence		K	R	F	F	G	A	A	R	N	T	R	E	G	G	S	L	T	I	I	A	T	A	L	V	E	T	G	S	K	M	D	E	V	I	F	E	E	F	K	G	T	G	N	M	E	L	V	L	S	R	Q	L	A	N	K	R	I	F	P	A	I	N	L	L	L	S	G	T	R	R	E	E	.	L	L	L	D	E	E	T
Template Known Secondary structure						T	T		B			S	S	S												S	S	S		T	T	T	B	T	T					T	T			S					B						T	T	T		S	S		B		G	G	G				T	T	G	G	.	G	T	S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	T	A	R	G	V	Q	S	I	L	Q	R	Y	Q	E	L	K	D	I	I	A	I	L	G	M	D	E	L	S	E	E	D	K	L	V	V	A	R	A	R	K	I	Q	R	F	L	S	Q
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	K	V	W	L	L	R	R	M	L	S	A	M	T	E	E	E	G	L	T	L	I	L	.	.	.	.	.	.	.	.	.	.	N	K	L	S	E	T	S	S	N	E	E	F	L	K	L
Template Known Secondary structure											T	T	T	T	S		T	T								.	.	.	.	.	.	.	.	.	.					T		S	S							T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.											.	.	.	.	.	410	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions