 |
Job Description | P0ABB4 | Confidence | 96.58% | Date | Thu Jan 5 11:15:05 GMT 2012 |
Rank | 77 | Aligned Residues | 90 |
% Identity | 17% | Template | c3b9qA_ |
PDB info |
PDB header:protein transport | Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit |
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
|
Resolution | 1.75 Å |
|
 |
  |   |
141 | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | K | G | G | K | V | G | L | F | G | G | A | G | V | G | K | T | V | N | M | M | E | L | I | R | N | I | A | I | E | H | S | G | Y | S | V | F | A | G | V | G | E | R | T | R | E | G | N | D | F | Y | H | E | M | T | D | S | N | V | I | D | K | V | S | L | V | Y | G | Q | M | N | E | P | P | G | N | R | L | R | V |
Query Conservation |   |
|   |
|
|
|   |   |
|   |
|   |   |
|   |
|
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|
|
|
|   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|   |
|
|
|
|   |   |   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
Template Conservation |   |
  |   |   |   |
|
|   |   |
|
|   |   |
|   |
|
|
|
|
|   |
|
|
|
|   |   |   |   | . |   |   |
|   |   |
|   |
|
|   |   |
|
|   |
|   |
|
|   |
|
|
|   |   |   |
|   | . | . |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . |
Template Sequence |   |
R | K | P | A | V | I | M | I | V | G | V | N | G | G | G | K | T | T | S | L | G | K | L | A | H | R | L | K | . |
N | E | G | T | K | V | L | M | A | A | G | D | T | F | R | A | A | A | S | D | Q | L | E | I | W | A | E | . |
. |
R | T | G | C | E | I | V | V | A | E | K | A | K | A | A | T | V | L | S | . |
. |
. |
Template Known Secondary structure |   |
S | S |
|  |  |  |  |  |  |
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | . |  | T | T |
|
|  |  |  |  |
|
|
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  | T |
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  | . | . | . |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
162 | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | |
190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | |
|
. | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | |
|
|
  |
  |   |
221 | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | L | T | G | L | T | M | A | E | K | F | R | D | E | G | R | D | V | L | L | F |
Query Conservation |   |
  |   |   |
|   |
|
|
|
|
|
|
|
|   |
|   |   |
|
|
|   |
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
Template Sequence |   |
. |
. |
. |
. |
. |
K | A | V | K | R | G | K | E | E | G | Y | D | V | V | L | C |
Template Known Secondary structure |   |
. | . | . | . | . |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
238 | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|