Job Description P0ABB4 Confidence 100.00% Date Thu Jan 5 11:15:05 GMT 2012 Rank 12 Aligned Residues 430 % Identity 24% Template c3a5dM_ PDB info PDB header:hydrolase Chain: M: PDB Molecule:v-type atp synthase beta chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase Resolution 4.80 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		G	K	I	V	Q	V	I	G	A	V	V	D	V	E	F	P	Q	D	A	V	P	R	V	Y	D	A	L	E	V	Q	N	G	N	E	R	L	V	L	E	V	Q	Q	Q	L	G	G	G	I	V	R	T	I	A	M	G	S	S	D	G	L	R	R	G	.	L	D	V	K	D	L	E	H	P	I	E	V	P	V	G	K
Query Conservation																																																																	.
Alig confidence																					.	.																																											.
Template Conservation																					.	.
Template Sequence		T	G	I	T	Y	I	S	G	P	L	L	F	V	E	N	A	K	D	L	.	.	A	Y	G	A	I	V	D	I	K	D	G	T	G	R	V	R	G	G	Q	V	I	E	V	S	E	E	Y	A	V	I	Q	V	F	E	E	T	T	G	L	D	L	A	T	T	S	V	S	L	V	E	D	V	A	R	L	G	V	S	K
Template Known Secondary structure									T	T							S	S			.	.			T	T						S	S		S	S												T	T							S	S			T	T			T	T							S	S								G
Template Predicted Secondary structure																					.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	L	G	R	I	M	N	V	L	G	E	P	V	D	M	K	G	E	I	G	E	E	E	R	W	A	I	H	R	A	A	P	S	Y	E	E	L	S	N	S	Q	E	L	L	E	T	G	I	K	V	I	D	L	M	C	P	F	A	K	G	G	K	V	G	L	F	G	G	A	G	V	G	K	T	V	N	M	M	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	M	L	G	R	R	F	N	G	I	G	K	P	I	D	G	L	P	P	I	T	P	E	K	R	L	P	I	T	G	L	P	L	N	P	V	A	R	R	K	P	E	Q	F	I	Q	T	G	I	S	T	I	D	V	M	N	T	L	V	R	G	Q	K	L	P	I	F	S	G	S	G	L	P	A	N	E	I	A	A	Q
Template Known Secondary structure		G	G	T	T					T	T	S		B	S	S	S							S					S	S	S		S	S			B		S					S	B		B		S						T	T	S			B	T	T		B							T	T	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		163	.	.	.	.				.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.
Predicted Secondary structure							.	.	.																																																																		.
Query SS confidence							.	.	.																																																																		.
Query Sequence		L	I	R	N	I	.	.	.	A	I	E	H	S	G	Y	S	V	F	A	G	V	G	E	R	T	R	E	G	N	D	F	Y	H	E	M	T	D	S	N	V	I	D	K	V	S	L	V	Y	G	Q	M	N	E	P	P	G	N	R	L	R	V	A	L	T	G	L	T	M	A	E	K	F	R	.	D	E	G	R	D	V
Query Conservation							.	.	.																																																																		.
Alig confidence							.	.	.																																																																		.
Template Conservation
Template Sequence		I	A	R	Q	A	T	V	R	P	K	E	E	P	F	A	V	V	F	A	A	M	G	I	T	Q	R	E	L	S	Y	F	I	Q	E	F	E	R	T	G	A	L	S	R	S	V	L	F	L	N	K	A	D	D	P	T	I	E	R	I	L	T	P	R	M	A	L	T	V	A	E	Y	L	A	F	E	H	D	Y	H	V
Template Known Secondary structure							B						S																											S	G	G	G	G								T	T	S																							S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		L	L	F	V	D	N	I	Y	R	Y	T	L	A	G	T	E	V	S	A	L	L	G	R	M	P	S	A	V	G	Y	Q	P	T	L	A	E	E	M	G	V	L	Q	E	R	I	T	S	T	K	T	.	.	G	S	I	T	S	V	Q	A	V	Y	V	P	A	D	D	L	T	D	P	S	P	A	T	T	F	A	H	L
Query Conservation																																																				.	.
Alig confidence																																																				.	.
Template Conservation
Template Sequence		L	V	I	L	T	D	M	T	N	Y	C	E	A	L	R	E	I	G	A	A	R	E	E	I	P	G	R	R	G	Y	P	G	Y	M	Y	T	D	L	A	T	I	Y	E	R	A	G	V	V	E	G	K	K	G	S	V	T	Q	I	P	I	L	S	M	P	D	D	D	R	T	H	P	I	P	D	L	T	G	Y	I	T
Template Known Secondary structure							T															T	T					G	G	G			T	T										T	S				B	T	T	S	S												G	G	G		T	T	S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.					.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																														.	.	.	.
Query SS confidence																														.	.	.	.
Query Sequence		D	A	T	V	V	L	S	R	Q	I	A	S	L	G	I	Y	P	A	V	D	P	L	D	S	T	S	R	Q	.	.	.	.	L	D	P	L	V	V	G	Q	E	H	Y	D	T	A	R	G	V	Q	S	I	L	Q	R	Y	Q	E	L	K	D	I	I	A	I	L	G	M	D	E	L	S	E	E	D	K	L	V	V	A
Query Conservation																														.	.	.	.
Alig confidence																														.	.	.	.
Template Conservation
Template Sequence		E	G	Q	I	Q	L	S	R	E	L	H	R	K	G	I	Y	P	P	I	D	P	L	P	S	L	S	R	L	M	N	N	G	V	G	K	G	K	T	R	E	D	H	K	Q	V	S	D	Q	L	Y	S	A	Y	A	N	G	V	D	I	R	K	L	V	A	I	I	G	E	D	A	L	T	E	N	D	R	R	Y	L	Q
Template Known Secondary structure		S					B							T	T		S	S		B		T	T	T				S	S	G	G	G	G		S	T	T	T	S		T	T																											G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.					.	.	.	.	.	.	.	440	.	.				.	.	.
Predicted Secondary structure																																										.	.	.	.											.	.	.
Query SS confidence																																										.	.	.	.											.	.	.
Query Sequence		R	A	R	K	I	Q	R	F	L	S	Q	P	F	F	V	A	E	V	F	T	G	S	P	G	K	Y	V	S	L	K	D	T	I	R	G	F	K	G	I	M	.	.	.	.	E	G	E	Y	D	H	L	P	E	Q	.	.	.	A	F	Y
Query Conservation																																										.	.	.	.											.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.															.	.	.	.											.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	D	A	F	E	R	F	F	I	N	Q	G	Q	Q	N	.	.	.	.	.	.	.	.	.	.	R	S	I	E	E	S	L	Q	I	A	W	A	L	L	S	M	L	P	Q	G	E	L	K	R	I	S	K	D	H	I	G	K	Y	Y
Template Known Secondary structure										T	T			S	S			.	.	.	.	.	.	.	.	.	.															T	T	S		G	G	G		T	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.											430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.