Job Description P0ABB4 Confidence 100.00% Date Thu Jan 5 11:15:05 GMT 2012 Rank 5 Aligned Residues 436 % Identity 24% Template c2r9vA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution Resolution 2.10 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	K	I	V	Q	V	I	G	A	V	V	D	V	E	F	P	Q	D	A	V	P	R	V	Y	D	A	L	E	V	Q	N	G	N	E	R	L	V	L	E	V	Q	Q	Q	L	G	G	G	I	V	R	T	I	A	M	G	S	S	D	G	L	R	R	G	L	D	V	K	D	L	E	H	P	I	E	V	P	V	G	K
Query Conservation
Alig confidence																						.	.													.	.	.
Template Conservation																						.	.													.	.	.
Template Sequence		T	G	K	V	I	Q	V	G	D	G	I	A	R	A	Y	G	L	N	K	V	.	.	X	V	S	E	L	V	E	F	V	E	T	G	.	.	.	V	K	G	V	A	F	N	L	E	E	D	N	V	G	I	I	I	L	G	E	Y	K	D	I	K	E	G	H	T	V	R	R	L	K	R	I	I	E	V	P	V	G	E
Template Known Secondary structure										T	T								T	T		.	.		T	T						T	T	T		.	.	.										T	T								S			T	T			T	T															S	G
Template Predicted Secondary structure																						.	.													.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	L	G	R	I	M	N	V	L	G	E	P	V	D	M	K	G	E	I	G	E	E	E	R	W	A	I	H	R	A	A	P	S	Y	E	E	L	S	N	S	Q	E	L	L	E	T	G	I	K	V	I	D	L	M	C	P	F	A	K	G	G	K	V	G	L	F	G	G	A	G	V	G	K	T	V	N	M	M	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	L	G	R	V	V	N	P	L	G	E	P	L	D	G	K	G	P	I	N	A	K	N	F	R	P	I	E	I	K	A	P	G	V	I	Y	R	K	P	V	D	T	P	L	Q	T	G	I	K	A	I	D	S	X	I	P	I	G	R	G	Q	R	E	L	I	I	G	D	R	Q	T	G	K	T	A	I	A	I	D
Template Known Secondary structure		G	G	T	T					T	T	S		B		S	S	S						S					S							G	G	G	B					S					S								S				T	T		B							T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	R	N	I	A	I	E	H	S	G	Y	S	V	F	A	G	V	G	E	R	T	R	E	G	N	D	F	Y	H	E	M	T	D	S	N	V	I	D	K	V	S	L	V	Y	G	Q	M	N	E	P	P	G	N	R	L	R	V	A	L	T	G	L	T	M	A	E	K	F	R	D	E	G	R	D	V	L	L	F	V
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		T	I	I	N	Q	.	K	G	Q	G	V	Y	C	I	Y	V	A	I	G	Q	K	K	S	A	I	A	R	I	I	D	K	L	R	Q	Y	G	A	X	E	Y	T	T	V	V	V	A	S	A	S	D	P	A	S	L	Q	Y	I	A	P	Y	A	G	C	A	X	G	E	Y	F	A	Y	S	G	R	D	A	L	V	V	Y
Template Known Secondary structure					T	T	.	T	T	T	T									S																T	T	G	G	G	G								T	T	S																					T	T	T
Template Predicted Secondary structure							.
Template SS confidence
		183	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.					.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.
Query SS confidence																																																.	.	.	.
Query Sequence		D	N	I	Y	R	Y	T	L	A	G	T	E	V	S	A	L	L	G	R	M	P	S	A	V	G	Y	Q	P	T	L	A	E	E	M	G	V	L	Q	E	R	I	T	S	T	K	T	.	.	.	.	G	S	I	T	S	V	Q	A	V	Y	V	P	A	D	D	L	T	D	P	S	P	A	T	T	F	A	H	L	D	A
Query Conservation																																																.	.	.	.
Alig confidence																																																.	.	.	.
Template Conservation
Template Sequence		D	D	L	S	K	H	A	V	A	Y	R	Q	L	S	L	L	X	R	R	P	P	G	R	E	A	Y	P	G	D	I	F	Y	L	H	S	R	L	L	E	R	A	V	R	L	N	D	K	L	G	G	G	S	L	T	A	L	P	I	V	E	T	Q	A	N	D	I	S	A	Y	I	P	T	N	V	I	S	I	T	D	G
Template Known Secondary structure			T														T	S				T	T																	T	T				B		T	T	T	T	S												S	T	T		T	T	S									T	S	S
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	V	L	S	R	Q	I	A	S	L	G	I	Y	P	A	V	D	P	L	D	S	T	S	R	Q	L	D	P	L	V	V	G	Q	E	H	Y	D	T	A	R	G	V	Q	S	I	L	Q	R	Y	Q	E	L	K	D	I	I	A	I	L	G	M	D	E	L	S	E	E	D	K	L	V	V	A	R	A	R	K	I	Q
Query Conservation
Alig confidence																														.																																	.	.
Template Conservation																														.																																	.	.
Template Sequence		Q	I	Y	L	E	P	G	L	F	Y	A	G	Q	R	P	A	I	N	V	G	L	S	V	S	R	V	G	G	.	S	A	Q	I	K	A	X	K	Q	V	A	G	X	L	R	I	D	L	A	Q	Y	R	E	L	E	T	F	A	Q	F	A	T	.	.	E	L	D	P	A	T	R	A	Q	I	I	R	G	Q	R	L	X
Template Known Secondary structure					B								T		S	S		B		T	T	T				G	G	G	T	.	T	T	S																							T	T	G	G	G		S	.	.
Template Predicted Secondary structure																														.																																	.	.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.			.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	L	S	Q	P	F	F	V	A	E	V	F	T	G	S	P	G	K	Y	V	S	L	K	D	T	I	R	G	F	K	G	I	M	E	G	E	Y	D	H	L	P	E	Q	A	F	Y	M	V	G	S	I	E	E	A	V	E	K	A	K	K
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.																												.	.
Template Sequence		E	L	L	K	Q	E	Q	Y	S	P	.	.	.	.	.	.	.	.	.	.	X	P	V	E	E	Q	V	V	V	L	F	A	G	V	R	G	Y	L	D	D	L	P	V	E	E	V	R	.	.	R	F	E	K	E	F	L	R	F	X	H	E
Template Known Secondary structure				T				T	T			.	.	.	.	.	.	.	.	.	.															T	T	T	T	T	T	S		G	G	G			.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.																												.	.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.											.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.			.	.	.	.	460	.	.	.	.	.	.	.