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Job DescriptionP0ABB4
Confidence100.00%DateThu Jan 5 11:15:05 GMT 2012
Rank3Aligned Residues457
% Identity72%Templatec2jizD_
PDB info PDB header:hydrolaseChain: D: PDB Molecule:atp synthase subunit beta; PDBTitle: the structure of f1-atpase inhibited by resveratrol.
Resolution2.3 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  TGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGK
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Template Sequence  TGRIVAVIGAVVDVQFDEGLPP. ILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGP
Template Known Secondary structure  TTSS



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   10.........20.........30. ........40.........50.........60.........70.........80........
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  ATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMME
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Template Sequence  ETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME
Template Known Secondary structure  GGTT

TTS
B
SSS




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GGG







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   8990.........100.........110.........120.........130.........140.........150.........160........
 
   163......170.........180.........190...... ...200.........210.........220.........230.... .
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Query Sequence  LIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTD. . . . . . SNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDE. G
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Template Sequence  LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG
Template Known Secondary structure  TTT
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   169170.........180.........190.........200.........210.........220.........230.........240........
 
   236...240.........250.........260.........270.........280.........290.........300.........310.....
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Query Sequence  RDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAH
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Template Sequence  QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAH
Template Known Secondary structure 


TTTTTT



GGG

TTTTSS

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   249250.........260.........270.........280.........290.........300.........310.........320........
 
   316...320.........330.........340.........350.........360.........370.........380.........390.....
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Query Sequence  LDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARAR
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Template Sequence  LDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRAR
Template Known Secondary structure 
SB
TTT
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   329330.........340.........350.........360.........370.........380.........390.........400........
 
   396...400.........410.........420.........430.........440.........450.........460
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Query Sequence  KIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSIEEAVEKAKKL
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Template Sequence  KIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKL
Template Known Secondary structure  T



STTSS





TTTTTS
GGGGTT
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   409410.........420.........430.........440.........450.........460.........470...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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