Job Description P0ABB4 Confidence 100.00% Date Thu Jan 5 11:15:05 GMT 2012 Rank 14 Aligned Residues 403 % Identity 22% Template c2c61A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:a-type atp synthase non-catalytic subunit b; PDBTitle: crystal structure of the non-catalytic b subunit of a-type2 atpase from m. mazei go1 Resolution 1.5 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	V	V	D	V	E	F	P	Q	D	A	V	P	R	V	Y	D	A	L	E	V	Q	N	G	N	E	R	L	V	L	E	V	Q	Q	Q	L	G	G	G	I	V	R	T	I	A	M	G	S	S	D	G	L	R	R	G	L	D	V	K	D	L	E	H	P	I	E	V	P	V	G	K	A	T	L	G	R	I	M	N
Query Conservation
Alig confidence														.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	P	L	I	F	V	E	K	T	E	P	V	.	.	G	Y	N	E	I	V	N	I	K	M	G	D	G	T	V	R	R	G	Q	V	L	D	S	S	A	D	I	V	V	V	Q	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	G	E	T	L	K	L	P	A	S	V	D	L	L	G	R	I	L	S
Template Known Secondary structure											S			.	.		T	T								T	T	S												S	S								.	.	.	.	.	.	.	.	.	.	.	.	.					B							G	G	G	T	T
Template Predicted Secondary structure														.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.														.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		V	L	G	E	P	V	D	M	K	G	E	I	G	E	E	E	R	W	A	I	H	R	A	A	P	S	Y	E	E	L	S	N	S	Q	E	L	L	E	T	G	I	K	V	I	D	L	M	C	P	F	A	K	G	G	K	V	G	L	F	G	G	A	G	V	G	K	T	V	N	M	M	E	L	I	R	N	I	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																																																															.	.	.
Template Conservation
Template Sequence		G	S	G	E	P	R	D	G	G	P	R	I	V	P	D	Q	L	L	D	I	N	G	A	A	M	N	P	Y	A	R	L	P	P	K	D	F	I	Q	T	G	I	S	T	I	D	G	T	N	T	L	V	R	G	Q	K	L	P	I	F	S	A	S	G	L	P	H	N	E	I	A	L	Q	I	A	R	Q	A	S	V	P
Template Known Secondary structure		T	T	S		B	S	S	S							S					S	S	S		S	S			B		S					S	B		B		S						T	T	S			B	T	T		B							T	T	S														B		T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		A	I	E	H	S	G	Y	S	V	F	A	G	V	G	E	R	T	R	E	G	N	D	F	Y	H	E	M	T	D	S	N	V	I	D	K	V	S	L	V	Y	G	Q	M	N	E	P	P	G	N	R	L	R	V	A	L	T	G	L	T	M	A	E	K	F	R	.	D	E	G	R	D	V	L	L	F	V	D	N	I	Y
Query Conservation																																																																			.
Alig confidence																																																																			.
Template Conservation
Template Sequence		G	S	E	S	A	F	A	V	V	F	A	A	M	G	I	T	N	E	E	A	Q	Y	F	M	S	D	F	E	K	T	G	A	L	E	R	A	V	V	F	L	N	L	A	D	D	P	A	V	E	R	I	V	T	P	R	M	A	L	T	A	A	E	Y	L	A	Y	E	H	G	M	H	V	L	V	I	L	T	D	I	T
Template Known Secondary structure		T		S	S																											S	G	G	G	G								T	T	S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		R	Y	T	L	A	G	T	E	V	S	A	L	L	G	R	M	P	S	A	V	G	Y	Q	P	T	L	A	E	E	M	G	V	L	Q	E	R	I	T	.	.	S	T	K	T	G	S	I	T	S	V	Q	A	V	Y	V	P	A	D	D	L	T	D	P	S	P	A	T	T	F	A	H	L	D	A	T	V	V	L	S	R
Query Conservation																																								.	.
Alig confidence																																								.	.
Template Conservation
Template Sequence		N	Y	A	E	A	L	R	Q	M	G	A	A	R	N	E	V	P	G	R	R	G	Y	P	G	Y	M	Y	T	D	L	A	T	L	Y	E	R	A	G	I	V	K	G	A	K	G	S	V	T	Q	I	P	I	L	S	M	P	G	D	D	I	T	H	P	I	P	D	L	S	G	Y	I	T	E	G	Q	I	V	V	A	R
Template Known Secondary structure								T	T	S	G	G	G	T	T			T	T	S	T	T			T											T	S				B	T	T	S	S													S		T	T	T	S						G	G	G	G	T	T					B
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.					350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.																																																			.
Query SS confidence																											.	.	.	.																																																			.
Query Sequence		Q	I	A	S	L	G	I	Y	P	A	V	D	P	L	D	S	T	S	R	Q	L	D	P	L	V	.	.	.	.	V	G	Q	E	H	Y	D	T	A	R	G	V	Q	S	I	L	Q	R	Y	Q	E	L	K	D	I	I	A	I	L	G	M	D	E	L	S	E	E	D	K	L	V	V	A	R	A	R	K	I	Q	R	.
Query Conservation																											.	.	.	.																																																			.
Alig confidence																											.	.	.	.																																																			.
Template Conservation
Template Sequence		E	L	H	R	K	G	I	Y	P	P	I	N	V	L	P	S	L	S	R	L	M	N	S	G	I	G	A	G	K	T	R	E	D	H	K	A	V	S	D	Q	M	Y	A	G	Y	A	E	G	R	D	L	R	G	L	V	A	I	V	G	K	E	A	L	S	E	R	D	T	K	F	L	E	F	A	D	L	F	E	D	K
Template Known Secondary structure						T	T		S	S		B		T	T	T				T	T	G	G	G	S		S	T	T	T	S		T	T																											G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	S	Q	P	F	F	V	A	E	V	F	T	G	S	P	G	K	Y	V	S	L	K	D	T	I	R	G	F	K	G	I	M	E	G	E	Y	D	H
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	R	Q	G	R	N	E	N	.	.	.	.	.	.	.	.	.	.	R	T	I	E	D	T	L	E	I	G	W	Q	I	L	T	H	L	P	E	N
Template Known Secondary structure		T	T				T	T			.	.	.	.	.	.	.	.	.	.															T	T	S		G	G
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		411	.	.	.	.	.	.	.	.											420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.