Job Description P0ABB4 Confidence 100.00% Date Thu Jan 5 11:15:05 GMT 2012 Rank 24 Aligned Residues 348 % Identity 17% Template c1xpuB_ PDB info PDB header:transcription/rna Chain: B: PDB Molecule:rho transcription termination factor; PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb) Resolution 3.05 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.								.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																										.	.	.																						.	.	.	.	.	.	.
Query SS confidence																																										.	.	.																						.	.	.	.	.	.	.
Query Sequence		N	G	N	E	R	L	V	L	E	V	Q	Q	Q	L	G	G	G	I	V	R	T	I	A	M	G	S	S	D	G	L	R	R	G	L	D	V	K	D	L	E	.	.	.	H	P	I	E	V	P	V	G	K	A	T	L	G	R	I	M	N	V	L	G	E	.	.	.	.	.	.	.	P	V	D	M	K	G	E	I	G
Query Conservation																																										.	.	.																						.	.	.	.	.	.	.
Alig confidence																																										.	.	.																						.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	G	E	D	I	F	G	D	G	V	L	E	I	L	Q	D	G	F	G	F	L	R	S	A	D	S	S	Y	L	A	G	P	D	D	I	Y	V	S	P	S	Q	I	R	R	F	N	L	R	T	G	D	T	I	S	G	K	I	R	P	P	K	E	G	E	R	Y	F	A	L	L	K	V	N	E	V	N	F	D	K
Template Known Secondary structure		T	S	T	T												T	T	S							G	G	G	T	T				T	T													T			T	T												S	S			S									S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		104	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180
Predicted Secondary structure									.	.																																																																.
Query SS confidence									.	.																																																																.
Query Sequence		E	E	E	R	W	A	I	.	.	H	R	A	A	P	S	Y	E	E	L	S	N	S	Q	E	L	L	E	T	G	I	K	V	I	D	L	M	C	P	F	A	K	G	G	K	V	G	L	F	G	G	A	G	V	G	K	T	V	N	M	M	E	L	I	R	N	I	A	I	E	H	S	G	.	Y	S	V	F	A	G	V
Query Conservation									.	.																																																																.
Alig confidence									.	.																																																																.
Template Conservation
Template Sequence		P	E	N	N	K	I	L	F	E	N	L	T	P	L	H	A	N	S	R	L	R	M	G	S	T	E	D	L	T	A	R	V	L	D	L	A	S	P	I	G	R	G	Q	R	G	L	I	V	A	P	P	K	A	G	K	T	M	L	L	Q	N	I	A	Q	S	I	A	Y	N	H	P	D	C	V	L	M	V	L	L	I
Template Known Secondary structure		S						G	G	G						G	G	G	S							S	T											S				T	T									S	S	S	S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	R	T	R	E	G	N	D	F	Y	H	E	M	T	D	S	N	V	I	D	K	V	S	L	V	Y	G	Q	M	N	E	P	P	G	N	R	L	R	V	A	L	T	G	L	T	M	A	E	K	F	R	D	E	G	R	D	V	L	L	F	V	D	N	I	Y	R	Y	T	L	A	G	T	E	V	S	A	L	L	G
Query Conservation
Alig confidence																.	.	.	.	.	.	.																																																							.	.	.	.
Template Conservation																.	.	.	.	.	.	.																																																							.	.	.	.
Template Sequence		D	E	R	P	E	E	V	T	E	M	Q	R	L	V	.	.	.	.	.	.	.	K	G	E	V	V	A	S	T	F	D	E	P	A	S	R	H	V	Q	V	A	E	M	V	I	E	K	A	K	R	L	V	E	H	K	K	D	V	I	I	L	L	D	S	I	T	R	L	A	R	A	Y	N	T	V	.	.	.	.	V
Template Known Secondary structure																.	.	.	.	.	.	.	S	S							T	T	S																						T	T										S											.	.	.	.	S
Template Predicted Secondary structure																.	.	.	.	.	.	.																																																							.	.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.								.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.					.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.														.
Query SS confidence																													.														.
Query Sequence		R	M	P	S	A	V	G	Y	Q	P	T	L	A	E	E	M	G	V	L	Q	E	R	I	T	S	T	K	.	T	G	S	I	T	S	V	Q	A	V	Y	V	P	.	A	D	D	L	T	D	P	S	P	A	T	T	F	A	H	L	D	A	T	V	V	L	S	R	Q	I	A	S	L	G	I	Y	P	A	V	D	P	L
Query Conservation																													.														.
Alig confidence																													.														.
Template Conservation
Template Sequence		P	A	V	L	T	G	G	V	D	A	N	A	L	H	R	P	K	R	F	F	G	A	A	R	N	V	E	E	G	G	S	L	T	I	I	A	T	A	L	I	D	T	G	S	K	M	D	E	V	I	Y	E	E	F	K	G	T	G	N	M	E	L	H	L	S	R	K	I	A	E	K	R	V	F	P	A	I	D	Y	N
Template Known Secondary structure					B	S	S	S	S	B	G	G	G	G									T					T	T	S													S	S										T	T	T	T	T	S	S					B							T	T		S			B		T	T
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	T	S	R	Q	L	D	P	L	V	V	G	Q	E	H	Y	D	T	A	R	G	V	Q	S	I	L	Q	R	Y	Q	E	L	K	D	I	I	A	I	L	G	M	D	E	L	S	E	E	D	K	L	V	V	A	R
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		R	S	G	T	R	K	E	E	.	L	L	T	T	Q	E	E	L	Q	K	M	W	I	L	R	K	I	I	H	P	M	G	E	I	D	A	M	E	F	L	I	N	K	L	A	M	T	K	T	N	D	D	F	F	E	M
Template Known Secondary structure		T				T	T			.			S																T	T	S														T	T	S		G	G	G	T	T
Template Predicted Secondary structure										.
Template SS confidence
		362	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions