Job Description P0ABB4 Confidence 100.00% Date Thu Jan 5 11:15:05 GMT 2012 Rank 1 Aligned Residues 460 % Identity 68% Template c1skyE_ PDB info PDB header:atp synthase Chain: E: PDB Molecule:f1-atpase; PDBTitle: crystal structure of the nucleotide free alpha3beta3 sub-complex of2 f1-atpase from the thermophilic bacillus ps3 Resolution 3.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.								.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.
Query Sequence		M	A	T	G	K	I	V	Q	V	I	G	A	V	V	D	V	E	F	P	Q	D	A	V	P	R	V	Y	D	A	L	E	V	Q	N	G	.	.	.	.	.	.	.	N	E	R	L	V	L	E	V	Q	Q	Q	L	G	G	G	I	V	R	T	I	A	M	G	S	S	D	G	L	R	R	G	L	D	V	K	D	L	E
Query Conservation																																					.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	T	R	G	R	V	I	Q	V	M	G	P	V	V	D	V	K	F	E	N	G	H	L	P	A	I	Y	N	A	L	K	I	Q	H	K	A	R	N	E	N	E	V	D	I	D	L	T	L	E	V	A	L	H	L	G	D	D	T	V	R	T	I	A	M	A	S	T	D	G	L	I	R	G	M	E	V	I	D	T	G
Template Known Secondary structure												T	T							S	T	T					T	T										S	S	T	T																T	T							S	S			T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		H	P	I	E	V	P	V	G	K	A	T	L	G	R	I	M	N	V	L	G	E	P	V	D	M	K	G	E	I	.	G	E	E	E	R	W	A	I	H	R	A	A	P	S	Y	E	E	L	S	N	S	Q	E	L	L	E	T	G	I	K	V	I	D	L	M	C	P	F	A	K	G	G	K	V	G	L	F	G	G	A
Query Conservation																															.
Alig confidence																															.
Template Conservation
Template Sequence		A	P	I	S	V	P	V	G	Q	V	T	L	G	R	V	F	N	V	L	G	E	P	I	D	L	E	G	D	I	P	A	D	A	R	R	D	P	I	H	R	P	A	P	K	F	E	E	L	A	T	E	V	E	I	L	E	T	G	I	K	V	V	D	L	L	A	P	Y	I	K	G	G	K	I	G	L	F	G	G	A
Template Known Secondary structure									S	G	G	G	T	T					T	T	S		B		S	S	S					T	T	S					S							G	G	G	B			S							S								S				T	T									S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	G	K	T	V	N	M	M	E	L	I	R	N	I	A	I	E	H	S	G	Y	S	V	F	A	G	V	G	E	R	T	R	E	G	N	D	F	Y	H	E	M	T	D	S	N	V	I	D	K	V	S	L	V	Y	G	Q	M	N	E	P	P	G	N	R	L	R	V	A	L	T	G	L	T	M	A	E	K	F	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	G	K	T	V	L	I	Q	E	L	I	H	N	I	A	Q	E	H	G	G	I	S	V	F	A	G	V	G	E	R	T	R	E	G	N	D	L	Y	H	E	M	K	D	S	G	V	I	S	K	T	A	M	V	F	G	Q	M	N	E	P	P	G	A	R	M	R	V	A	L	T	G	L	T	M	A	E	Y	F	R
Template Known Secondary structure		S	S																	T										S	S															T	S	G	G	G	G								T	T	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		233		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		D	.	E	G	R	D	V	L	L	F	V	D	N	I	Y	R	Y	T	L	A	G	T	E	V	S	A	L	L	G	R	M	P	S	A	V	G	Y	Q	P	T	L	A	E	E	M	G	V	L	Q	E	R	I	T	S	T	K	T	G	S	I	T	S	V	Q	A	V	Y	V	P	A	D	D	L	T	D	P	S	P	A	T
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		D	E	Q	G	Q	D	G	L	L	F	I	D	N	I	F	R	F	T	Q	A	G	S	E	V	S	A	L	L	G	R	M	P	S	A	I	G	Y	Q	P	T	L	A	T	E	M	G	Q	L	Q	E	R	I	T	S	T	A	K	G	S	I	T	S	I	Q	A	I	Y	V	P	A	D	D	Y	T	D	P	A	P	A	T
Template Known Secondary structure				S											T															T					G	G	G			T	T										T	T	S	S		B	S	S												S	T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	A	H	L	D	A	T	V	V	L	S	R	Q	I	A	S	L	G	I	Y	P	A	V	D	P	L	D	S	T	S	R	Q	L	D	P	L	V	V	G	Q	E	H	Y	D	T	A	R	G	V	Q	S	I	L	Q	R	Y	Q	E	L	K	D	I	I	A	I	L	G	M	D	E	L	S	E	E	D	K	L	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	F	S	H	L	D	A	T	T	N	L	E	R	K	L	A	E	M	G	I	Y	P	A	V	D	P	L	V	S	T	S	R	A	L	A	P	E	I	V	G	E	E	H	Y	Q	V	A	R	K	V	Q	Q	T	L	E	R	Y	K	E	L	Q	D	I	I	A	I	L	G	M	D	E	L	S	D	E	D	K	L	V	V
Template Known Secondary structure				T	T		S					B		T	T					T		S	S		B		T	T	T			B	T	T																																				S	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	A	R	K	I	Q	R	F	L	S	Q	P	F	F	V	A	E	V	F	T	G	S	P	G	K	Y	V	S	L	K	D	T	I	R	G	F	K	G	I	M	E	G	E	Y	D	H	L	P	E	Q	A	F	Y	M	V	G	S	I	E	E	A	V	E	K	A	K	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	R	A	R	R	I	Q	F	F	L	S	Q	N	F	H	V	A	E	Q	F	T	G	Q	P	G	S	Y	V	P	V	K	E	T	V	R	G	F	K	E	I	L	E	G	K	Y	D	H	L	P	E	D	R	F	R	L	V	G	R	I	E	E	V	V	E	K	A	K	A	M
Template Known Secondary structure											T		B			T	T	T					S																				T	T	T	T	T	T	S		G	G	G	S	T	T	B	S	S	S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.