Job Description P0ABB4 Confidence 100.00% Date Thu Jan 5 11:15:05 GMT 2012 Rank 4 Aligned Residues 453 % Identity 67% Template c1fx0B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atp synthase beta chain; PDBTitle: crystal structure of the chloroplast f1-atpase from spinach Resolution 3.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.
Query SS confidence																																						.	.	.	.	.
Query Sequence		T	G	K	I	V	Q	V	I	G	A	V	V	D	V	E	F	P	Q	D	A	V	P	R	V	Y	D	A	L	E	V	Q	N	G	N	E	R	.	.	.	.	.	L	V	L	E	V	Q	Q	Q	L	G	G	G	I	V	R	T	I	A	M	G	S	S	D	G	L	R	R	G	L	D	V	K	D	L	E	H	P	I	E
Query Conservation																																						.	.	.	.	.
Alig confidence																																						.	.	.	.	.
Template Conservation
Template Sequence		L	G	R	I	A	Q	I	I	G	P	V	L	N	V	A	F	P	P	G	K	M	P	N	I	Y	N	A	L	I	V	K	G	R	D	T	A	G	Q	P	M	N	V	T	C	E	V	Q	Q	L	L	G	N	N	R	V	R	A	V	A	M	S	A	T	D	G	L	T	R	G	M	E	V	I	D	T	G	A	P	L	S
Template Known Secondary structure										T	T								S	S					T	T									S	S	S	S														S	S	S							S	S			T	T			T	T							S	S	S
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	V	G	K	A	T	L	G	R	I	M	N	V	L	G	E	P	V	D	M	K	G	E	I	G	E	E	E	R	W	A	I	H	R	A	A	P	S	Y	E	E	L	S	N	S	Q	E	L	L	E	T	G	I	K	V	I	D	L	M	C	P	F	A	K	G	G	K	V	G	L	F	G	G	A	G	V	G	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	V	G	G	P	T	L	G	R	I	F	N	V	L	G	E	P	V	D	N	L	R	P	V	D	T	R	T	T	S	P	I	H	R	S	A	P	A	F	T	Q	L	D	T	K	L	S	I	F	E	T	G	I	K	V	V	N	L	L	A	P	Y	R	R	G	G	K	I	G	L	F	G	G	A	G	V	G	K	T
Template Known Secondary structure					S	S	T	T	T	T					T	T	S		B		S	S	S	S					S					S							G	G	G											S		T	T					S				T	T									S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200								.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																													.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.
Query Sequence		V	N	M	M	E	L	I	R	N	I	A	I	E	H	S	G	Y	S	V	F	A	G	V	G	E	R	T	R	E	G	N	D	F	Y	H	E	M	T	D	S	N	V	I	.	.	.	.	.	.	.	D	K	V	S	L	V	Y	G	Q	M	N	E	P	P	G	N	R	L	R	V	A	L	T	G	L	T	M	A	E	K
Query Conservation																																													.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	I	M	E	L	I	N	N	I	A	K	A	H	G	G	V	S	V	F	G	G	V	G	E	R	T	R	E	G	N	D	L	Y	M	E	M	K	E	S	G	V	I	N	E	Q	N	I	A	E	S	K	V	A	L	V	Y	G	Q	M	N	E	P	P	G	A	R	M	R	V	G	L	T	A	L	T	M	A	E	Y
Template Known Secondary structure											T	T	T	T		S	S								S			S													T	T	S	S		S	S	T	T												T	T	S						T	T								T
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		231	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		F	R	D	.	E	G	R	D	V	L	L	F	V	D	N	I	Y	R	Y	T	L	A	G	T	E	V	S	A	L	L	G	R	M	P	S	A	V	G	Y	Q	P	T	L	A	E	E	M	G	V	L	Q	E	R	I	T	S	T	K	T	G	S	I	T	S	V	Q	A	V	Y	V	P	A	D	D	L	T	D	P	S	P
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		F	R	D	V	N	E	Q	D	V	L	L	F	I	D	N	I	F	R	F	V	Q	A	G	S	E	V	S	A	L	L	G	R	M	P	S	A	V	G	Y	Q	P	T	L	S	T	E	M	G	S	L	Q	E	R	I	T	S	T	K	E	G	S	I	T	S	I	Q	A	V	Y	V	P	A	D	D	L	T	D	P	A	P
Template Known Secondary structure			T	T	T	S											S															T					G	G	G			T	T								T	S	S	S	S	S			T	T												G	G	G		S	S	S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	T	F	A	H	L	D	A	T	V	V	L	S	R	Q	I	A	S	L	G	I	Y	P	A	V	D	P	L	D	S	T	S	R	Q	L	D	P	L	V	V	G	Q	E	H	Y	D	T	A	R	G	V	Q	S	I	L	Q	R	Y	Q	E	L	K	D	I	I	A	I	L	G	M	D	E	L	S	E	E	D	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	T	F	A	H	L	D	A	T	T	V	L	S	R	G	L	A	A	K	G	I	Y	P	A	V	D	P	L	D	S	T	S	T	M	L	Q	P	R	I	V	G	E	E	H	Y	E	I	A	Q	R	V	K	E	T	L	Q	R	Y	K	E	L	Q	D	I	I	A	I	L	G	L	D	E	L	S	E	E	D	R	L
Template Known Secondary structure						T	T		S					B		S	T	T	T	T	T	T		S	S		B		S	S	S			B	T	T		S	T	T	T	T																														S	T	T	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	A	R	A	R	K	I	Q	R	F	L	S	Q	P	F	F	V	A	E	V	F	T	G	S	P	G	K	Y	V	S	L	K	D	T	I	R	G	F	K	G	I	M	E	G	E	Y	D	H	L	P	E	Q	A	F	Y	M	V	G	S	I	E	E	A	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	A	R	A	R	K	I	E	R	F	L	S	Q	P	F	F	V	A	E	V	F	T	G	S	P	G	K	Y	V	G	L	A	E	T	I	R	G	F	Q	L	I	L	S	G	E	L	D	S	L	P	E	Q	A	F	Y	L	V	G	N	I	D	E	A	T	A
Template Known Secondary structure													T					S	S		T	T	T	S		S																T	T	T	T	T	T	T	S	S	S		G	G	G	T	T	T		S	S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.