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Job DescriptionP0AC75
Confidence99.82%DateThu Jan 5 11:17:28 GMT 2012
Rank28Aligned Residues311
% Identity14%Templatec3o3cD_
PDB info PDB header:transferaseChain: D: PDB Molecule:glycogen [starch] synthase isoform 2; PDBTitle: glycogen synthase basal state udp complex
Resolution3.51 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   110.........120. ........130.........140... ......150........ .160
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Query Sequence  LPDALNRFLNKV. . . . . . DPKLVLIMETELWPNLIAALHK. RKIPLVIANARLSAR. . . . . . . . . . . . . . . . . . . . . . SA
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Template Sequence  LGYTVAWFLGEVAHLDSQHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGDFYNCLESVDVDHEAGR
Template Known Secondary structure 

SSGGG
TTT
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TTGGGG

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   143......150.........160.........170.........180.........190.........200.........210.........220..
 
   161........170.........180.........190.........200.........210.........220........ .230
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Query Sequence  AGYAKLGKFVRRLLRRITLIAAQNEEDGARFVALGAKNNQVTVTGSLKFDISVTPQLAAKAVTLRRQW. . . . . . . . . . AP
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Template Sequence  FGIYHRYCIERAAAHSADVFTTVSQITAFEAEHLLKRKPDG. ILPNGLNVIKFQLHALKKEKINDFVRGHFHGCFDFDLD
Template Known Secondary structure  T
SSSSS


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B
GGGT

STT


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   225....230.........240.........250.........260..... ....270.........280.........290.........300...
 
   231........240.. .......250.........260. ........270.
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Query Sequence  HRPVWIATSTHE. . . GEESVVIAAHQALLQQFPN. . . . . . . LLLILVPRHP. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  NTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIG
Template Known Secondary structure  GSS

TTT
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   311........320.........330.........340.........350.........360.........370.........380.........390
 
   272.......280.........290.........300.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ERFPDAINLVRQAGLSYITRSSGEVPSTSTQVVV
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Template Sequence  KRIFDHAIRYPELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNA
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S
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SBSTTTTT
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TT
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T
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   391........400.........410.........420.........430.........440.........450.........460.........470
 
   306...310.. .......320.........330.........340.........350.........360.. .......370... ..
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Query Sequence  GDTMGEL. . MLLYGIADLAFVGGSLVERGGHNPLEAAAHAIPVLMGPHTFNFKDICARL. EQASGLITVTD. . . . . . . AT
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Template Sequence  NNPILGLDYDEFVRGCHL. GVFPSYYEPWGYTPAECTVMGVPSIT. TNVSGFGSYMEDLAKDYGIYIVDRRFKAPDESVE
Template Known Secondary structure  T
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SSBSS
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   484.....490.........500. ........510.........520....... ..530.........540.........550.........560.
 
   376...380.........390.........400... ......410.........420...
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Query Sequence  TLAKEVSSLLTDADYRSFYGRHAVEVLY. . . QNQGALQRLLQLLEPYLPPK
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Template Sequence  QLVDYMEEFVKKTAAQAINQRNRTERLSDLLDWKRMGLEYVKARQLALRRG
Template Known Secondary structure  T

GGGGBT
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   567..570.........580.........590.........600.........610.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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