Job Description P39414 Confidence 0.63% Date Thu Jan 5 12:00:49 GMT 2012 Rank 95 Aligned Residues 195 % Identity 15% Template c3rkoM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																														.	.
Query SS confidence																									.	.																														.	.
Query Sequence		S	W	A	V	S	G	F	S	N	S	V	I	W	L	I	F	A	A	F	M	F	G	T	.	.	G	Y	E	K	T	G	L	G	R	R	I	A	L	I	L	V	K	K	M	G	H	R	T	L	F	L	G	Y	A	.	.	V	M	F	S	E	L	I	L	A	P	V	T	P	S	N	S	A	R	G	A	G	I	I	Y
Query Conservation																									.	.																														.	.
Alig confidence																									.	.																														.	.
Template Conservation
Template Sequence		P	N	A	S	A	E	F	A	P	I	A	M	W	L	G	V	I	G	I	F	Y	G	A	W	M	A	F	A	Q	T	D	I	K	R	L	I	A	Y	T	S	V	S	H	M	G	F	V	L	I	A	I	Y	T	G	S	Q	L	A	Y	Q	G	A	V	I	Q	M	I	A	H	G	L	S	A	A	G	L	F	I	L	C
Template Known Secondary structure																													T		S	B																					T	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	I	R	N	L	P	P	L	Y	Q	S	Q	P	N	D	S	S	S	R	S	I	G	S	Y	I	M	W	M	G	I	V	A	D	C	V	T	S	A	I	F	L	T	A	M	A	P	N	L	L	L	I	G	L	M	K	S	A	S	H	A	T	L	S	W	G	D	W	F	L	G	M	L	P	L	S	I	L	L	V
Query Conservation
Alig confidence																																																													.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.
Template Sequence		G	Q	L	Y	E	R	I	H	T	R	D	M	R	M	M	G	G	L	W	S	K	M	K	W	L	P	A	L	S	L	F	F	A	V	A	T	L	G	M	P	G	T	G	N	F	V	G	E	F	M	I	L	F	G	S	F	Q	V	V	.	.	.	.	.	.	P	V	I	T	V	I	S	T	F	G	L	V	F	A	S
Template Known Secondary structure												B	G	G	G			S	G	G	G	T		S	S													S			T	T	S																		.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.							.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	V	P	W	L	A	Y	V	L	Y	P	P	V	L	K	S	G	D	Q	V	P	R	W	A	E	T	E	L	Q	A	M	G	P	L	C	S	R	E	K	R	M	L	G	L	M	V	G	A	L	V	L	W
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.
Template Sequence		V	Y	S	L	A	M	L	H	R	A	Y	F	G	K	A	K	S	.	.	.	.	.	.	.	.	Q	I	A	S	Q	E	L	P	G	M	S	L	R	E	L	F	M	I	L	L	L	V	V	L	L	V	L	L
Template Known Secondary structure													S	S	S	S		S	.	.	.	.	.	.	.	.	S	T	T		S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450									.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions