Job Description P39414 Confidence 34.76% Date Thu Jan 5 12:00:49 GMT 2012 Rank 1 Aligned Residues 199 % Identity 15% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	W	R	Y	L	A	P	L	A	V	I	A	I	I	A	L	L	P	V	P	A	G	L	E	N	H	T	W	L	Y	F	A	V	F	T	G	V	I	V	G	L	I	L	E	P	V	P	G	A	V	V	A	M	V	G	I	S	I	I	A	I	L	S	P	W	L	L	F	S	P	E	Q	L	A	Q	P	G	F	K	F
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T												T	T	T																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	K	S	L	S	W	A	V	S	G	F	S	N	S	V	I	W	L	I	F	A	A	F	M	F	G	T	G	Y	E	K	T	G	L	G	R	R	I	A	L	I	L	V	K	K	M	G	H	R	T	L	F	L	G	Y	A	V	M	F	S	E	L	I	L	A	P	V	T	P	S	N	S	A	R	G	A	G	I	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.																	.	.	.	.																																																.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																	.	.	.	.																																																.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	.	.	.	.	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.																T	.	.	.	.						T	T		S										T	S	T	T																										.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.																	.	.	.	.																																																.	.	.	.	.	.
Template SS confidence
									412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.					.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	I	I	R	N	L	P	P	L	Y	Q	S	Q	P	N	D	S	S	S	R	S	I	G	S	Y	I	M	W	M	G	I	V	A	D	C	V	T	S	A	I	F	L	T	A	M	A	P	N	L	L	L	I	G	L	M	K	S	A	S	H	A	T	L	S	W	G	D	W	F	L	G	M	L	P	L	S	I	L	L
Query Conservation
Alig confidence		.	.																			.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																			.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	V	X	G	T	X	S	Q	H	G	Q	L	E	A	N	K	W	V	T	.	.	.	.	.	.	.	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N	L	Q	N	V	T	.	.	.	.	.	.	.	.	.	.	.	.	I	V	A	A	T	P	F	L	F	V	V
Template Known Secondary structure		.	.						T	T	T	T		S	S							.	.	.	.	.	.	.																			G	G	G										.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.																			.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.								.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.													.	.	.	.	.	.	.	530	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	L	V	P	W	L	A	Y	V	L	Y	P	P	V	L	K	S	G	D	Q	V	P	R	W	A	E	T	E	L	Q	A	M	G	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R	E	Q	Q	R	F	N	A	R	L	A	R	E	R	R
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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