Return to main results Retrieve Phyre Job Id

Job DescriptionP39414
Confidence1.32%DateThu Jan 5 12:00:49 GMT 2012
Rank27Aligned Residues18
% Identity22%Templatec2gohA_
PDB info PDB header:viral proteinChain: A: PDB Molecule:vpu protein; PDBTitle: three-dimensional structure of the trans-membrane domain of2 vpu from hiv-1 in aligned phospholipid bicelles
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   468.470.........480.....
Predicted Secondary structure 
Query SS confidence 

















Query Sequence  LIFLVLLVITGLLWMPVV
Query Conservation 

   
        
 

Alig confidence 

















Template Conservation 

















Template Sequence  IVALVVAIIIAIVVWSIV
Template Predicted Secondary structure 
Template SS confidence 

















   8.10.........20.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions