Job Description P17583 Confidence 100.00% Date Thu Jan 5 11:36:14 GMT 2012 Rank 4 Aligned Residues 381 % Identity 10% Template d1pv7a_ SCOP info MFS general substrate transporter MFS general substrate transporter LacY-like proton/sugar symporter Resolution 3.60

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		L	L	V	L	V	L	I	G	L	N	M	R	P	L	L	T	S	V	G	P	L	L	P	Q	.	L	R	Q	A	S	G	M	S	F	S	V	A	A	L	L	T	A	L	P	V	V	T	M	G	G	L	A	L	A	G	S	W	L	H	Q	H	V	S	E	R	R	S	V	A	I	S	L	L	L	I	A	V	G	A	L
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		F	W	M	F	G	L	F	F	F	F	Y	F	F	I	M	G	A	Y	F	P	F	F	P	I	W	L	H	D	I	N	H	I	S	K	S	D	T	G	I	I	F	A	A	I	S	L	F	S	L	L	F	Q	P	L	F	G	L	L	S	D	K	L	G	L	R	K	Y	L	L	W	I	I	T	G	M	L	V	M	F	A
Template Known Secondary structure																																																				T												T	T		T												T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.							.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.
Query Sequence		M	R	E	L	Y	P	Q	S	A	L	L	L	S	S	A	L	L	G	G	V	G	I	G	I	I	Q	A	V	M	P	S	V	I	K	R	R	F	Q	Q	R	T	P	L	V	M	G	.	.	.	.	.	.	L	W	S	A	A	L	M	G	G	G	G	L	G	A	A	I	T	P	W	L	V	Q	H	S	E	T	W	Y
Query Conservation																																																.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.
Template Conservation
Template Sequence		P	F	F	I	F	I	F	G	P	L	L	Q	Y	N	I	L	V	G	S	I	V	G	G	I	Y	L	G	F	C	F	N	A	G	A	P	A	V	E	A	F	I	E	K	V	S	R	R	S	N	F	E	F	G	R	A	R	M	F	G	C	V	G	W	A	L	G	A	S	I	V	G	I	M	F	T	I	N	N	Q	F
Template Known Secondary structure							T							T	T								T	T	T	T	G	G	G	G	G	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.															.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	T	L	A	W	W	A	L	P	A	V	V	A	L	F	A	W	W	W	Q	S	A	R	E	V	A	S	S	H	K	T	T	T	T	P	V	R	V	V	F	T	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	W	T	L	G	V	Y	F	G	L	I	N	G	G	Y	A	S	L	I	A	W	L	P
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	W	L	G	S	G	C	A	L	I	L	A	V	L	L	F	F	A	K	T	D	A	P	S	S	A	T	V	A	N	A	V	G	A	N	H	S	A	F	S	L	K	L	A	L	E	L	F	R	Q	P	K	L	W	F	L	S	L	Y	V	I	G	V	S	C	T	Y	D	V	F	D	Q	Q	F	A	N	F	F	T
Template Known Secondary structure																			S	S				S		S	S	S		S	S					S														T	T	S	S																												T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	Y	I	E	I	G	A	S	A	Q	Y	S	G	S	L	L	A	L	M	T	L	G	Q	A	A	G	A	L	L	M	P	A	M	A	R	H	Q	D	R	R	K	L	L	M	L	A	L	V	L	Q	L	V	G	F	C	G	F	I	W	L	P	M	Q	L	P	V	L	W	A	M	V	C	G	L	G	L	G	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	F	F	A	T	G	E	Q	G	T	R	V	F	G	Y	V	T	T	M	G	E	L	L	N	A	S	I	M	F	F	A	P	L	I	I	N	R	I	G	G	K	N	A	L	L	L	A	G	T	I	M	S	V	R	I	I	G	S	S	F	A	T	S	A	L	E	V	V	I	L	K	T	L	H	M	F	E	V	P	F
Template Known Secondary structure		T	S	S	S																									T	T																														T
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		F	P	L	C	L	L	L	A	L	D	H	S	V	Q	P	A	I	A	G	K	L	V	A	F	M	Q	G	I	G	F	.	I	I	A	G	L	A	P	W	F	S	G	V	L	R	S	I	S	G	N	Y	L	M	D	W	A	F	H	A	L	C	V	V	G	L	M	I	I	T	L	R	F	A	P	V	R	F	P	Q	L
Query Conservation																																.
Alig confidence																																.																			.
Template Conservation																																																			.
Template Sequence		L	L	V	G	C	F	K	Y	I	T	S	Q	F	E	V	R	F	S	A	T	I	Y	L	V	C	F	C	F	F	K	Q	L	A	M	I	F	M	S	V	L	A	G	N	M	Y	E	S	I	G	.	F	Q	G	A	Y	L	V	L	G	L	V	A	L	G	F	T	L	I	S	V	F	T	L	S	G	P	G	P	L	S
Template Known Secondary structure														S		G	G	G										T	T	T																					.																							S			S	S		T	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	V	K	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	R	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions