Job Description P17583 Confidence 100.00% Date Thu Jan 5 11:36:14 GMT 2012 Rank 3 Aligned Residues 369 % Identity 14% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	L	V	L	I	G	L	N	M	R	P	L	L	T	S	V	G	P	L	L	P	Q	L	R	Q	A	S	G	M	S	F	S	V	A	A	L	L	T	A	L	P	V	V	T	M	G	G	L	A	L	A	G	S	W	L	H	Q	H	V	S	E	R	R	S	V	A	I	S	L	L	L	I	A	V	G	A	L	M	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	P	F	A	L	L	C	S	L	F	F	L	W	A	V	A	N	N	L	N	D	I	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y	A	L	G	A	A	L	F
Template Known Secondary structure		T																													T	T			T	T													T	T											S																			T
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		83	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		E	L	Y	.	.	.	P	Q	S	A	L	L	L	S	S	A	L	L	G	G	V	G	I	G	I	I	Q	A	V	M	P	S	V	I	K	R	R	F	Q	Q	R	T	P	L	V	M	G	L	W	S	A	A	L	M	G	G	G	G	L	G	A	A	I	T	P	W	L	V	Q	H	S	E	T	W	Y	Q	T	L	A	W
Query Conservation					.	.	.
Alig confidence					.	.	.
Template Conservation
Template Sequence		W	P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V	P	H	Q	S	Q	D	V
Template Known Secondary structure							T	T																														S	S		G	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.																																		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	A	L	P	A	V	V	A	L	F	A	W	W	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	A	R	E	V	A	S	S	H	K	T	T	T	T	P	V	R	V	V	F	T	P	R	A	W	T	L	G	V	Y	F	G
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	R	L	A	R	I	R	H	W	R	W	A	V	L	A	Q	F
Template Known Secondary structure					S																	T	T																			S						T	T	T					S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		L	I	N	G	G	Y	A	S	L	I	A	W	L	P	A	F	Y	I	E	I	.	.	G	A	S	A	Q	Y	S	G	S	L	L	A	L	M	T	L	G	Q	A	A	G	A	L	L	M	P	A	M	A	R	H	Q	D	R	R	K	L	L	M	L	A	L	V	L	Q	L	V	G	F	C	G	F	I	W	L	P	M	Q
Query Conservation																						.	.
Alig confidence																						.	.
Template Conservation
Template Sequence		C	Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	R	F	A	P	H	K	V	L	A	A	Y	A	L	I	A	M	A	L	C	L	I	S	A	F	A	G	G	H
Template Known Secondary structure																						S	T	T																															S																							S
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	V	L	W	A	M	V	C	G	L	G	L	G	G	A	F	P	L	C	L	L	L	A	L	D	H	S	V	Q	P	A	I	A	G	K	L	V	A	F	M	Q	G	I	G	F	I	I	A	G	L	A	P	W	F	S	G	V	L	R	S	I	S	G	N	Y	L	M	D	W	A	F	H	A	L	C	V	V	G	L
Query Conservation
Alig confidence																															.	.	.
Template Conservation																															.	.	.
Template Sequence		V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	.	.	.	Q	D	T	K	Y	G	S	S	F	I	V	M	T	I	I	G	G	G	I	V	T	P	V	M	G	F	V	S	D	A	A	G	N	I	P	T	A	E	L	I	P	A	L	C	F	A	V	I
Template Known Secondary structure															T	T											S	S		G	.	.	.	G	G											G	G	G																	T	S	S	G	G	G	G
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.				.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		365	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	I	T	L	R	F	A	P	V	R
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		F	I	F	A	R	.	F	R	S	Q	T
Template Known Secondary structure						T	.	S
Template Predicted Secondary structure							.
Template SS confidence
		426	.	.	.	430		.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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