 |
Job Description | P0AAL3 | Confidence | 97.56% | Date | Thu Jan 5 11:13:13 GMT 2012 |
Rank | 57 | Aligned Residues | 82 |
% Identity | 18% | Template | c2h89B_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; |
PDBTitle: avian respiratory complex ii with malonate bound
|
Resolution | 2.40 Å |
|
 |
  |   |
32 | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
L | G | L | Q | Q | Q | T | A | R | A | S | G | V | R | L | R | P | P | G | A | I | N | E | N | A | F | A | S | A | C | V | R | C | G | Q | C | V | Q | A | C | P | Y | D | T | L | K | L | A | T | L | A | S | G | L | S | A | G | T | P | Y | F | V | A | R | D | I | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |   |   |   |   |
|
|   |   |
|
|
|
|
|   |
|
|   |
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|   |   |   |   |   |
|
|   |   |   |   |   |
Template Sequence |   |
L | K | K | K | D | E | S | K | Q | G | K | E | Q | Y | L | Q | S | I | E | D | R | Q | K | L | D | G | L | Y | E | C | I | L | C | A | C | C | S | T | S | C | P | S | Y | W | W | N | G | D | K | Y | L | G | P | A | V | L | M | Q | A | Y | R | W | M | I | D | S | R | D | D | Y | T | E | E | R | L | A | Q | L | Q | D |
Template Known Secondary structure |   |
|
|
| S |
|
| T | T | T | T | S | S |
|
|
|
|
|  |  |  |  |  | T | T | T | T | T | T | T |
|
|
|
|
| T | T | G | G | G |
|  |  |  |  |  |  | T | T | T |
|
|
|  |  |  |  |  |  |  |  |  |  |  | S |
| T | T |
| S |
|  |  |  |  |  |  | T | T |
| S |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
129 | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . |
  |
  |   |
|
|
|
|
|
|
99 | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
C | E | M | C | E | D | I | P | C | A | K | V | C | P | S | G | A |
Query Conservation |   |
. | . | . | . | . | . |
|   |   |
|   |   |   |   |
|
|   |
|
|
|   |
|
|
Alig confidence |   |
. | . | . | . | . | . |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|   |   |
|
| . | . |   |
|   |   |
|
|
|   |
|
|
Template Sequence |   |
P | F | S | L | Y | R | C | H | T | I | M | . |
. |
N | C | T | R | T | C | P | K | G | L |
Template Known Secondary structure |   |
T | T | T | T | T | T |
|
|
|
|
| . | . |  |  |  |  |  |
| T | T |
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
209 | 210 | . | . | . | . | . | . | . | . | . | |
|
220 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|