Return to main results Retrieve Phyre Job Id

Job DescriptionP24202
Confidence36.93%DateThu Jan 5 11:41:11 GMT 2012
Rank84Aligned Residues95
% Identity15%Templatec2kkoB_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:possible transcriptional regulatory protein PDBTitle: solution nmr structure of the homodimeric winged helix-turn-2 helix dna-binding domain (fragment 1-100) mb0332 from3 mycobacterium bovis, a possible arsr-family transcriptional4 regulator. northeast structural genomics consortium target5 mbr242e.
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70........ .80..
Predicted Secondary structure 
























...
Query SS confidence 








































































. . .



Query Sequence  YDKFIEPVLRYLATKPEGAAARDVHEAAADALGLDDSQRAKVITSGQLVYKNRAGWAHDRLKRAGLSQSLSRG. . . KWCL
Query Conservation        


  
   
     


   
     


 
      

      

 

   
 




    

...   
Alig confidence 




















.








.














....





















...



Template Conservation       
  
 
 



   

. 

  
   .     


  
 

 ....  

 

  
  



   
 
    
 
Template Sequence  KAALLDQVARVGKALANGRRL. QILDLLAQG. ERAVEAIATATGMNL. . . . TTASANLQALKSGGLVEARREGTRQYYRI
Template Known Secondary structure  T
.TT
.
T

....TSTT
Template Predicted Secondary structure 

.

.





....




Template SS confidence 















































































   8.10.........20........ .30....... ..40.........50.. .......60.........70.........80.
 
   83......90.........100......
Predicted Secondary structure 




Query SS confidence 























Query Sequence  TPAGFDWVASHPQPMTEQETNHLA
Query Conservation 
  

  
   
  
         
Alig confidence 























Template Conservation      
  
   
       
    
Template Sequence  AGEDVARLFALVQVVADEHLEHHH
Template Known Secondary structure  S
S



Template Predicted Secondary structure 




Template SS confidence 























   82.......90.........100.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions