Job Description P13001 Confidence 98.74% Date Thu Jan 5 11:33:21 GMT 2012 Rank 199 Aligned Residues 205 % Identity 16% Template c3d0kA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative poly(3-hydroxybutyrate) depolymerase lpqc; PDBTitle: crystal structure of the lpqc, poly(3-hydroxybutyrate) depolymerase2 from bordetella parapertussis Resolution 1.83 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.																	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	G	Q	G	N	V	H	L	V	L	L	H	G	W	G	L	N	A	E	V	W	R	C	I	D	E	E	L	S	S	.	.	H	F	T	L	H	L	V	D	L	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	R	S	R	G	F	G	A	L	S	L	A	D	M	A	E	A	V	L	Q
Query Conservation																																.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	T	P	D	R	P	V	V	V	V	Q	H	G	V	L	R	N	G	A	D	Y	R	D	F	W	I	P	A	A	D	R	H	K	L	L	I	V	A	P	T	F	S	D	E	I	W	P	G	V	E	S	Y	N	N	G	R	A	F	T	A	A	G	N	P	R	H	V	D	G	W	T	Y	A	L	V	A	R	V	L	A
Template Known Secondary structure				T	T	S									T	T										T								T										T	T	T	S						T	T	T	T	T		B		T	T	S		B			G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		71								.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.
Query Sequence		Q	.	.	.	.	.	.	.	A	P	D	K	A	I	W	L	G	W	S	L	G	G	L	V	A	S	Q	I	A	L	T	H	P	E	R	V	Q	A	L	V	T	V	A	S	S	P	C	F	S	A	R	D	E	W	P	G	I	K	P	D	V	L	A	G	F	Q	Q	Q	L	S	D	D	F	Q	R	T	V	E	R	F
Query Conservation			.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	R	A	A	E	I	A	D	C	E	Q	V	Y	L	F	G	H	S	A	G	G	Q	F	V	H	R	L	X	S	S	Q	P	H	A	P	F	H	A	V	T	A	A	N	P	G	W	Y	T	L	P	T	F	E	H	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	S				S	S							T													S		S	T	T		S						S		S	S				S	S	T	T	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		L	A	L	Q	T	M	G	T	E	T	A	R	Q	D	A	R	A	L	K	K	T	V	L	A	L	P	M	P	E	V	D	V	L	N	G	G	L	E	I	L	K	T	V	D	L	R	Q	P	L	Q	N	V	S	M	P	F	L	R	L	Y	G	Y	L	D	G	L	V	P	R	K	V	V	P	M	L	D	K	L	W	.
Query Conservation																																																																																	.
Alig confidence		.	.	.																				.	.	.	.	.	.	.	.	.	.	.																																															.
Template Conservation		.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	F	P	E	G	L	D	G	V	G	L	T	E	D	H	L	A	R	L	L	.	.	.	.	.	.	.	.	.	.	.	A	Y	P	X	T	I	L	A	G	D	Q	D	I	A	T	P	N	L	P	S	E	P	A	A	L	R	Q	G	P	H	R	Y	A	R	A	R	H	Y	Y	E	A	G	Q	R	A	A	A
Template Known Secondary structure		.	.	.	T	T	T	S	S	B	T	T	T											.	.	.	.	.	.	.	.	.	.	.		S								T	T							S			S					T	T		S	S
Template Predicted Secondary structure		.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.												.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
							223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	P	H	S	E	S	Y	I	F	A	K	A	A	H	A	P	F	I	S	H	P	A	E	F	C	H	L	L	V	A	L	K	Q	R
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.														.	.	.	.
Template Conservation																				.	.	.	.
Template Sequence		Q	R	G	L	P	F	G	W	Q	L	Q	V	V	P	G	I	G	H	.	.	.	.	D	G	Q	A	X	S	Q	V	C	A	S	L	W	F	D	G
Template Known Secondary structure				T											T	T			S	.	.	.	.															T	S
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.					.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions