Job Description P05793 Confidence 87.44% Date Thu Jan 5 10:58:54 GMT 2012 Rank 322 Aligned Residues 85 % Identity 15% Template c3l4bG_ PDB info PDB header:transport protein Chain: G: PDB Molecule:trka k+ channel protien tm1088b; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima Resolution 3.45 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.											.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	V	I	V	G	C	G	A	Q	G	L	N	Q	G	L	N	M	R	D	S	G	L	D	I	S	Y	A	L	R	K	E	A	I	A	E	K	R	A	S	W	R	K	A	T	E	N	G	F	K	V	G	T	Y	.	.	.	.	.	.	.	.	.	.	E	E	L	I	P	Q	A	D	L	V	I	N	L	T	P	D
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																													.						.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.						.	.	.	.	.
Template Sequence		K	V	I	I	I	G	G	E	T	T	A	Y	Y	L	A	R	S	M	L	S	R	K	Y	G	V	V	I	.	I	N	K	D	R	.	.	.	.	.	E	L	C	E	E	F	A	K	K	L	K	A	T	I	I	H	G	D	G	S	H	K	E	I	L	R	D	A	E	V	S	K	N	D	V	V	V	I	L	T	P	R
Template Known Secondary structure																						T	T						.			S			.	.	.	.	.										S	S	S					S		T	T	S								T			T	T								S
Template Predicted Secondary structure																													.						.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		109	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		K	Q	H	S	D	V	V	.	R	T	V	Q	P	L	M	K	D	G	A	A	L	G
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		D	E	V	N	L	F	I	A	Q	L	V	M	K	D	F	G	V	K	R	V	V	S
Template Known Secondary structure															T	S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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